Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
32 projects found  

3 accessions found for   

Data for CP000792  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000792.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000792_1341 CDS_1346521-1345172 68.9 1.8e-19 1
CP000792_1394 CDS_1398229-1397243 39.7 3.3e-11 1
CP000792_0399 CDS_406817-405597 29.1 3.3e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000792_1341 1/1 224 290 .. 1 87 [] 68.9 1.8e-19
CP000792_1394 1/1 118 182 .. 1 87 [] 39.7 3.3e-11
CP000792_0399 1/1 189 255 .. 1 87 [] 29.1 3.3e-08

Alignments of top-scoring domains:
CP000792_1341: domain 1 of 1, from 224 to 290: score 68.9, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++sHELRTPL++I++ ++ +++++ ++l+e +
CP000792_1 224 SEKQLTSDVSHELRTPLSVIMAESDYAKNYS-------QNLDEAK-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e le+i r+++ + +Li+++L+lsr+eag
CP000792_1 262 -----------ESLEVISRQSRKITSLIDQILELSRLEAG 290

CP000792_1394: domain 1 of 1, from 118 to 182: score 39.7, E = 3.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +a+l+HE+R+P+ +I+++ ++Ll+++ e+++
CP000792_1 118 SMGQVAAHLAHEIRNPIGSISLLNSTLLKRA-----------EPKI- 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e i++ + r +r+i L +++ +
CP000792_1 153 ----------LPIVEQIQKGIWRVERIIKATLLFTKGLSI 182

CP000792_0399: domain 1 of 1, from 189 to 255: score 29.1, E = 3.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ e++ +++HEL+TPL+++++ e+ l ++ +e+
CP000792_0 189 YQKELFVGVAHELKTPLAVMKTKNEVTLL---------KPRESEK-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e+l++ ++++ ++++i +L++ r e
CP000792_0 225 ---------YIEALKSNNEAINGMNAMIGSVLEIGRQEGA 255


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 18 0|===
-13 49 1|*======
-12 115 46|======*==========
-11 212 239|=============================== *
-10 355 445|=================================================== *
-9 373 459|====================================================== *
-8 315 344|============================================= *
-7 217 216|==============================*
-6 162 124|=================*======
-5 103 68|=========*=====
-4 41 36|=====*
-3 27 19|==*=
-2 9 10|=*
-1 3 5|*
0 5 2|*
1 2 1|*
2 3 0|=
3 0 0|
4 1 0|=
5 1 0|=
> 6 10 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 174.5835
P(chi-square) = 3.115e-32

Total sequences searched: 2024

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: