Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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14 projects found  

1 accessions found for Roseiflexus castenholzii DSM 13941  

Data for CP000804  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000804.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000804_1073 CDS_1441202-1444330 101.2 2.6e-28 1
CP000804_3510 CDS_4699918-4698272 95.4 1.1e-26 1
CP000804_3085 CDS_4113290-4116025 93.8 3.3e-26 1
CP000804_3050 CDS_4065431-4061868 88.9 8e-25 1
CP000804_1019 CDS_1373139-1370983 87.2 2.5e-24 1
CP000804_1598 CDS_2123493-2126213 87.1 2.5e-24 1
CP000804_0783 CDS_1051336-1057821 83.5 2.7e-23 1
CP000804_2573 CDS_3400646-3402571 82.6 4.7e-23 1
CP000804_2948 CDS_3929299-3930828 82.5 5.1e-23 1
CP000804_3219 CDS_4315115-4318126 82.0 7.1e-23 1
CP000804_4188 CDS_5548521-5550260 80.0 2.7e-22 1
CP000804_0965 CDS_1302632-1301442 75.1 6.6e-21 1
CP000804_1599 CDS_2126210-2127385 74.0 1.3e-20 1
CP000804_2991 CDS_3985125-3983275 73.4 1.9e-20 1
CP000804_0224 CDS_286674-288101 72.6 3.3e-20 1
CP000804_4228 CDS_5594309-5595979 72.0 5e-20 1
CP000804_1133 CDS_1521785-1520706 71.9 5.2e-20 1
CP000804_2094 CDS_2759774-2757315 71.3 7.9e-20 1
CP000804_3330 CDS_4456794-4454095 71.2 8.3e-20 1
CP000804_0933 CDS_1267193-1265778 69.2 3e-19 1
CP000804_1231 CDS_1644385-1642715 67.3 1.1e-18 1
CP000804_3331 CDS_4459203-4457044 67.0 1.3e-18 1
CP000804_1458 CDS_1920602-1919151 66.1 2.3e-18 1
CP000804_0151 CDS_189435-186391 63.6 1.2e-17 1
CP000804_0863 CDS_1159159-1161687 62.1 3.2e-17 1
CP000804_0345 CDS_436925-435774 61.2 5.8e-17 1
CP000804_0811 CDS_1094765-1092597 61.0 6.5e-17 1
CP000804_0241 CDS_303969-305192 60.6 8.4e-17 1
CP000804_2535 CDS_3352020-3350611 59.0 2.3e-16 1
CP000804_2839 CDS_3780179-3778449 57.9 4.8e-16 1
CP000804_4043 CDS_5374086-5372848 57.0 8.7e-16 1
CP000804_3334 CDS_4464523-4462226 56.9 9.5e-16 1
CP000804_2595 CDS_3432333-3434471 56.1 1.6e-15 1
CP000804_2713 CDS_3599167-3598025 56.1 1.6e-15 1
CP000804_0582 CDS_787965-789515 55.7 2.1e-15 1
CP000804_2920 CDS_3899092-3895388 51.5 3.2e-14 1
CP000804_3581 CDS_4802234-4799130 50.9 4.8e-14 1
CP000804_4219 CDS_5588034-5586757 47.0 5.9e-13 1
CP000804_3076 CDS_4103983-4101938 46.9 6.2e-13 1
CP000804_3725 CDS_4999461-5000939 41.8 1.8e-11 1
CP000804_3029 CDS_4032564-4034498 38.6 1.4e-10 1
CP000804_1740 CDS_2293779-2295347 37.3 3.3e-10 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000804_1073 1/1 791 859 .. 1 87 [] 101.2 2.6e-28
CP000804_3510 1/1 165 233 .. 1 87 [] 95.4 1.1e-26
CP000804_3085 1/1 671 739 .. 1 87 [] 93.8 3.3e-26
CP000804_3050 1/1 736 802 .. 1 87 [] 88.9 8e-25
CP000804_1019 1/1 481 547 .. 1 87 [] 87.2 2.5e-24
CP000804_1598 1/1 629 697 .. 1 87 [] 87.1 2.5e-24
CP000804_0783 1/1 1921 1989 .. 1 87 [] 83.5 2.7e-23
CP000804_2573 1/1 384 452 .. 1 87 [] 82.6 4.7e-23
CP000804_2948 1/1 259 326 .. 1 87 [] 82.5 5.1e-23
CP000804_3219 1/1 484 552 .. 1 87 [] 82.0 7.1e-23
CP000804_4188 1/1 308 376 .. 1 87 [] 80.0 2.7e-22
CP000804_0965 1/1 156 221 .. 1 87 [] 75.1 6.6e-21
CP000804_1599 1/1 169 237 .. 1 87 [] 74.0 1.3e-20
CP000804_2991 1/1 377 445 .. 1 87 [] 73.4 1.9e-20
CP000804_0224 1/1 244 311 .. 1 87 [] 72.6 3.3e-20
CP000804_4228 1/1 290 358 .. 1 87 [] 72.0 5e-20
CP000804_1133 1/1 127 191 .. 1 87 [] 71.9 5.2e-20
CP000804_2094 1/1 433 499 .. 1 87 [] 71.3 7.9e-20
CP000804_3330 1/1 658 726 .. 1 87 [] 71.2 8.3e-20
CP000804_0933 1/1 227 291 .. 1 87 [] 69.2 3e-19
CP000804_1231 1/1 311 375 .. 1 87 [] 67.3 1.1e-18
CP000804_3331 1/1 476 544 .. 1 87 [] 67.0 1.3e-18
CP000804_1458 1/1 238 302 .. 1 87 [] 66.1 2.3e-18
CP000804_0151 1/1 788 856 .. 1 87 [] 63.6 1.2e-17
CP000804_0863 1/1 480 544 .. 1 87 [] 62.1 3.2e-17
CP000804_0345 1/1 148 212 .. 1 87 [] 61.2 5.8e-17
CP000804_0811 1/1 490 558 .. 1 87 [] 61.0 6.5e-17
CP000804_0241 1/1 167 231 .. 1 87 [] 60.6 8.4e-17
CP000804_2535 1/1 249 315 .. 1 87 [] 59.0 2.3e-16
CP000804_2839 1/1 349 414 .. 1 87 [] 57.9 4.8e-16
CP000804_4043 1/1 192 260 .. 1 87 [] 57.0 8.7e-16
CP000804_3334 1/1 501 573 .. 1 87 [] 56.9 9.5e-16
CP000804_2595 1/1 472 540 .. 1 87 [] 56.1 1.6e-15
CP000804_2713 1/1 152 216 .. 1 87 [] 56.1 1.6e-15
CP000804_0582 1/1 283 349 .. 1 87 [] 55.7 2.1e-15
CP000804_2920 1/1 881 946 .. 1 87 [] 51.5 3.2e-14
CP000804_3581 1/1 665 731 .. 1 87 [] 50.9 4.8e-14
CP000804_4219 1/1 207 273 .. 1 87 [] 47.0 5.9e-13
CP000804_3076 1/1 459 523 .. 1 87 [] 46.9 6.2e-13
CP000804_3725 1/1 263 329 .. 1 87 [] 41.8 1.8e-11
CP000804_3029 1/1 420 485 .. 1 87 [] 38.6 1.4e-10
CP000804_1740 2/2 287 344 .. 1 81 [. 36.9 4.3e-10

Alignments of top-scoring domains:
CP000804_1073: domain 1 of 1, from 791 to 859: score 101.2, E = 2.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksef+a++sHELRTPLt+I+gy+++Ll+ + ++l e+
CP000804_1 791 MKSEFVAMVSHELRTPLTSIKGYIDMLLD------GDAGPLAVEH-- 829

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++ a+rll LindlLd+srieag
CP000804_1 830 ----------QELLQIVKSNADRLLLLINDLLDMSRIEAG 859

CP000804_3510: domain 1 of 1, from 165 to 233: score 95.4, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla++sHE RTPL+aI+g+aelL++ + ++l++eq
CP000804_3 165 LKDEFLAGISHEVRTPLSAILGLAELLRA------KIVGPLNDEQ-- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l++i+ ++++ll+ indlLdl++ieag
CP000804_3 204 ----------VEMLSRIEASGRHLLAVINDLLDLAKIEAG 233

CP000804_3085: domain 1 of 1, from 671 to 739: score 93.8, E = 3.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+ ++sHELRTP+t+I+g+++lL + +g ++l+e q
CP000804_3 671 LKTEFIGTVSHELRTPMTSIKGFTQLLAM------GGLGPLNETQ-- 709

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +i++ aer+ ++indlLd+++ie+g
CP000804_3 710 ----------KEFLGIIQSNAERMIAIINDLLDITKIETG 739

CP000804_3050: domain 1 of 1, from 736 to 802: score 88.9, E = 8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+n+sHELRTPL++I+gya++L+ ++ +++ +
CP000804_3 736 AKSVFLSNISHELRTPLNSILGYAQILEH---------DPTTSDYA- 772

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++i++++e+ll+Li+dlLdl++ieag
CP000804_3 773 ----------RKSLRVIQSSGEQLLNLIDDLLDLAKIEAG 802

CP000804_1019: domain 1 of 1, from 481 to 547: score 87.2, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefl+ +sHELRTPLt+I+gy+elLl+ + ++ ++
CP000804_1 481 LKSEFLSIVSHELRTPLTSIMGYTELLLA---------RDFTPGEQ- 517

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++t+++ea++l ++++dlL +r+eag
CP000804_1 518 ----------REFVKTVYNEANHLYQIVEDLLGVTRLEAG 547

CP000804_1598: domain 1 of 1, from 629 to 697: score 87.1, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++sHELRTPL+aI+g++ ++l+ +d++ ++ q
CP000804_1 629 LKGQFLAAVSHELRTPLNAIIGFSTVMLD------EIDGPITPLQ-- 667

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l++i r ++ ll+Li++lLdl+rieag
CP000804_1 668 ----------REDLKIINRNGRFLLHLIDELLDLARIEAG 697

CP000804_0783: domain 1 of 1, from 1921 to 1989: score 83.5, E = 2.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ef++n+sHELRTPLt+I+gy++lL +l+eeq
CP000804_0 1921 AKREFISNVSHELRTPLTSIKGYVDLLML------NPKWKLNEEQ-- 1959

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yl+++++ ++rl +Lind+L++ ri+ +
CP000804_0 1960 ----------LSYLSVVKSNTHRLMNLINDILEIGRIDDN 1989

CP000804_2573: domain 1 of 1, from 384 to 452: score 82.6, E = 4.7e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE RTPL+aI+gy++l++ +l t ++
CP000804_2 384 AKSAFLAHMSHEVRTPLSAILGYTDLIRLDL-------TRRGQSV-- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e le i+ +a++ll +in++Ldls+i+ag
CP000804_2 422 ---------YQEELEAIHASAQHLLTMINNILDLSKIDAG 452

CP000804_2948: domain 1 of 1, from 259 to 326: score 82.5, E = 5.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLta++g++e+L + +++ ++q+l
CP000804_2 259 HQRRFIADVSHELRTPLTAMQGNLEVLAR---------GAARDPQLL 296

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ ++re+ rl r++ndlL l+r +ag
CP000804_2 297 ----------NESLDDMRREVARLIRMVNDLLLLARSDAG 326

CP000804_3219: domain 1 of 1, from 484 to 552: score 82.0, E = 7.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPLt+I+gya+l+ +++ e ++
CP000804_3 484 AKSRFLANMSHELRTPLTTIIGYADLITL---------ATQQGEFNR 521

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+r+ + ++++++++ll++indlLdls+ieag
CP000804_3 522 ---------IRDDITRVRNAGKHLLAIINDLLDLSKIEAG 552

CP000804_4188: domain 1 of 1, from 308 to 376: score 80.0, E = 2.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTPL+aI+gy++lL e+ + + ++
CP000804_4 308 AKSMFLATMSHELRTPLNAILGYVQLLHLEA-------QIHGRSEM- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i++++++ll +i+++Ld+s+ie+g
CP000804_4 347 ----------LPDLERIRSAGKHLLTIISNILDFSKIEQG 376

CP000804_0965: domain 1 of 1, from 156 to 221: score 75.1, E = 6.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++an+sHELRTPL++I++++e+L+ ++ +
CP000804_0 156 SRRDLVANVSHELRTPLASIKLLVETLQS---------DPPAPVA-- 191

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i +e++ + +L+++l +ls+ie+g
CP000804_0 192 ----------QRMLSQIAQEVDAITQLVEELHELSQIESG 221

CP000804_1599: domain 1 of 1, from 169 to 237: score 74.0, E = 1.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla+lsHELRTPLtaI+gy+el +++ + l++ q
CP000804_1 169 LKNTFLATLSHELRTPLTAILGYLELFERRT------LGSLNDVQ-- 207

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++i r a+ l+r++n+lL l ++
CP000804_1 208 ----------GQAINVIARNARTLSRILNNLLYLQEVRST 237

CP000804_2991: domain 1 of 1, from 377 to 445: score 73.4, E = 1.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHE+RTPLtaI+gy++lL+++ + ++ q+
CP000804_2 377 VKSVFLAHMSHEIRTPLTAIMGYCQLLEAGI-------ERQNLAQT- 415

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i+ ++ +ll+L n++L++++ieag
CP000804_2 416 ----------RADLEAIRVASGHLLSLANNVLEMAWIEAG 445

CP000804_0224: domain 1 of 1, from 244 to 311: score 72.6, E = 3.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELR PLt Ir+ ae++l++ + +++q
CP000804_0 244 RQQRFIASASHELRAPLTLIRASAEVALRDT-------PSDTADQ-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l il e+++++rL++dlL+l+r+++g
CP000804_0 282 ----------YELLGDILAESDHMRRLVDDLLTLTRLDSG 311

CP000804_4228: domain 1 of 1, from 290 to 358: score 72.0, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++ +sHELRTP++ I+gyae+L + +d+++++ ++
CP000804_4 290 MQNTFISVISHELRTPVSIIKGYAETLAR-------QDAAWDAATL- 328

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l +i++ea+rl ++in lL+ sr+++
CP000804_4 329 ----------REGLAVIIEEADRLAQQINTLLEASRLQTD 358

CP000804_1133: domain 1 of 1, from 127 to 191: score 71.9, E = 5.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ n++HELRTPL+++ gy+e Ll+ + l+ +
CP000804_1 127 QRVTLIGNVAHELRTPLAGLEGYLEGLLD---------GVLPGDP-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++e++rl+rL++dl lsr eag
CP000804_1 163 -----------ETISAMQHEVRRLRRLVDDLQHLSRVEAG 191

CP000804_2094: domain 1 of 1, from 433 to 499: score 71.3, E = 7.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++HE ++PLt+I+gy++l+l+ dt ls+
CP000804_2 433 AIGQLVAGVAHEVNNPLTSISGYTQLMLR--------DTSLSPGI-- 469

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i +aer r++++lL ++r +
CP000804_2 470 ----------REDLQHINTQAERAARIVQNLLMFAREHKP 499

CP000804_3330: domain 1 of 1, from 658 to 726: score 71.2, E = 8.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++f+a++sHELR PLt+I gy++lLl++l +els +q
CP000804_3 658 AKTDFIATVSHELRSPLTVIYGYVDLLLRGL------VGELSGDQ-- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++le +++ +e +++++ ++ + iea+
CP000804_3 697 ----------YDLLEAVRNRVELMNNIVKNVILVASIEAN 726

CP000804_0933: domain 1 of 1, from 227 to 291: score 69.2, E = 3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+LRTPL+ +rgy+e L++ + +
CP000804_0 227 ARRQMTADLAHDLRTPLSIMRGYTEGLRD---------GRINGSP-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++++ e+e+l+rLi+dl+ ls ++ag
CP000804_0 263 -----------RIYQIMHGEVEHLQRLIDDLRLLSLADAG 291

CP000804_1231: domain 1 of 1, from 311 to 375: score 67.3, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksef+a +sHELRTPL+ ++gy+ + +++++ q
CP000804_1 311 LKSEFIAIASHELRTPLSIVLGYTMMVRDQVE----------GGQ-- 345

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
reyl+++l+ a+r+ ++++d+ l i++g
CP000804_1 346 ----------REYLQRVLEGAQRIKEIVDDMVNLRHIDTG 375

CP000804_3331: domain 1 of 1, from 476 to 544: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +++l H+LR PLt+I+ + +L++ ++ ++ +e+q
CP000804_3 476 LREDYTSMLVHDLRAPLTSIMNGIMMLQR------GIVGPVNEQQ-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l+++++ ++ +l+Lin lLd+s++e+g
CP000804_3 515 ----------QELLKIAYQGSQTMLHLINTLLDISKLEQG 544

CP000804_1458: domain 1 of 1, from 238 to 302: score 66.1, E = 2.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++la+++HELRTPL++I+g++ +Ll++++ +l ++
CP000804_1 238 ARRRLLADIAHELRTPLSVIQGNLRALLDDVF-------PLEKDE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ti++e+ l+rL+ dl++l+ +eag
CP000804_1 276 -------------IATIYDETLLLSRLVADLRELTLAEAG 302

CP000804_0151: domain 1 of 1, from 788 to 856: score 63.6, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ ++ H+LR PL+++++ +el+ +++ ++ls++q
CP000804_0 788 MRQDLMHMIVHDLRSPLSSVMASLELMMRGV------PGALSDQQ-- 826

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ +a ++l++in lLd+sr+eag
CP000804_0 827 ----------LHVLQIANTSATSMLEMINTLLDISRLEAG 856

CP000804_0863: domain 1 of 1, from 480 to 544: score 62.1, E = 3.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HEL++PLta++g+a +L+ +++ e
CP000804_0 480 AVGELVAGVAHELNNPLTAVLGFANILQQ----------TAPTEY-- 514

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i ++a r +r++++lL+++r ++
CP000804_0 515 ----------QHDLAMIVESATRARRIVQNLLTFARQRQV 544

CP000804_0345: domain 1 of 1, from 148 to 212: score 61.2, E = 5.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a+++HELRTPLt+I gy e Ll+++ +++eq+
CP000804_0 148 RRLALIADVAHELRTPLTTIEGYMEGLLDGV--------IAPDEQT- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ea rl+rL ++l lsr+eag
CP000804_0 186 -------------FTLIRHEAARLRRLTEELGLLSRAEAG 212

CP000804_0811: domain 1 of 1, from 490 to 558: score 61.0, E = 6.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f++++sHELR+PL+++ g+++l l ++ ++l++ q
CP000804_0 490 ARMDFISMVSHELRNPLHTLNGFVKLVLQ------GRAGPLTALQ-- 528

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ +++++e+l+ +++lL++ r ag
CP000804_0 529 ----------KDFLSMADEQIEQLSGRVSELLEYNRFKAG 558

CP000804_0241: domain 1 of 1, from 167 to 231: score 60.6, E = 8.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e +a+++HEL++PL+ I+g+aelL +++++
CP000804_0 167 ALGEIVAGVAHELNNPLAIILGNAELLSP----------QRTPDD-- 201

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e i+++a+r +r ++ l +++r +
CP000804_0 202 ----------QRSVEQIIESAKRARRVVQSLATFARRGPI 231

CP000804_2535: domain 1 of 1, from 249 to 315: score 59.0, E = 2.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTP++a+ + + + +e ++s +
CP000804_2 249 RERQFTADASHELRTPVAAMEAIITVTRE---------RPRSVTE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++l+ +l +++rl++Li+dlL+l+r e+
CP000804_2 285 ---------YTQALDDLLVQTRRLRSLIDDLLQLTRSETR 315

CP000804_2839: domain 1 of 1, from 349 to 414: score 57.9, E = 4.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ H+L++PLta++g++elL + ++lse q
CP000804_2 349 NTALLAQMVIHDLKNPLTALIGFLELLSA---------ADLSESQ-- 384

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++++lr ++ l L++dlLdl r +g
CP000804_2 385 ----------RSLIDSALRNGRDLAGLVDDLLDLIRYNEG 414

CP000804_4043: domain 1 of 1, from 192 to 260: score 57.0, E = 8.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ +sHELR PL + +++lL++++ +e+ ++ +
CP000804_4 192 ELQQFTSIVSHELREPLRMVVSFLDLLRRRY-------GEQLDDRA- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+ +++ a r++++i+ lL ++r+++
CP000804_4 231 ----------NEYIAYAHDGATRMQAIIDKLLAYARLDQH 260

CP000804_3334: domain 1 of 1, from 501 to 573: score 56.9, E = 9.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldk.v.lagdtelseeq
ak++fla ++HELR PL+a+r ya+lL + ++++ +d +++++
CP000804_3 501 AKDDFLAVAAHELRSPLAAVRSYADLLIR---ReQrRDRDKDAPSDL 544

rlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l ++ +++ ++lrL+++lLd+sr++ag
CP000804_3 545 RG-------------LTILSQQVSHMLRLVDNLLDMSRLDAG 573

CP000804_2595: domain 1 of 1, from 472 to 540: score 56.1, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sH+L+ PL +I+g++ L++++ +e + + +
CP000804_2 472 ELERFTYTASHDLKSPLITIQGFLGYLERDA-------QEGNTKRM- 510

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i +++ ++rL+ndlL+lsri+
CP000804_2 511 ----------QDDIRRIGAAVHKMERLLNDLLELSRIGRV 540

CP000804_2713: domain 1 of 1, from 152 to 216: score 56.1, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++ +++HELRTPL++I gyae l+++ +++ e+
CP000804_2 152 RRVALIGDVAHELRTPLATIEGYAEGVLDGV-------VTANGET-- 189

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
il+e+ rl+rL+ dl +lsr+ea
CP000804_2 190 -------------WALILDEVGRLRRLVADLQELSRAEAR 216

CP000804_0582: domain 1 of 1, from 283 to 349: score 55.7, E = 2.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++a+++HE +PL aI+g++ l le + +e +
CP000804_0 283 AIGHLAASIAHEVGNPLQAIQGFLALFLE---------QCPPETPN- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+ +++e++r+ r +++l+dl r +a
CP000804_0 320 ----------QHFLQLAEEEIDRIVRVLERLRDLYRPRAD 349

CP000804_2920: domain 1 of 1, from 881 to 946: score 51.5, E = 3.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+++HEL++PL++I+g+++l l ++ +
CP000804_2 881 ALGRLVAGAAHELNNPLAVILGLSQLQLG---------EDIPLSV-- 916

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le i+r+a+r +++ +l+ + + +a
CP000804_2 917 ----------RADLEQIERAARRAAAIVHQLRAFGQPRAL 946

CP000804_3581: domain 1 of 1, from 665 to 731: score 50.9, E = 4.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g a+l+l+ t s+ +
CP000804_3 665 AIGRLAGGVAHDFNNILTVISGSADLALT---------TLPSDSPA- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i+++a+r +L+++lL+++r +
CP000804_3 702 ----------YPDIQAIQQSARRATHLVRQLLTFARRQPS 731

CP000804_4219: domain 1 of 1, from 207 to 273: score 47.0, E = 5.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++a+l+HE+++PL aI ++ lL+ +l++e+r
CP000804_4 207 LVGRLTAALAHEINNPLQAIANTLYLLQH---------RPLDDEKR- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl +++e+e+ + ++++Ldl r +
CP000804_4 244 ----------QRYLAMAQQETEHVIAGVRRMLDLYRSSGQ 273

CP000804_3076: domain 1 of 1, from 459 to 523: score 46.9, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+++a ++HE++TPL +I+ y+ lL++ + ++
CP000804_3 459 ASSRLAAIVAHEINTPLQSIQNYLYLLRA----------HGAAQS-- 493

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ + +e+ r + L+++lLdl r + g
CP000804_3 494 ----------GEFLDLVSDEICRVSGLLRRLLDLHRPGDG 523

CP000804_3725: domain 1 of 1, from 263 to 329: score 41.8, E = 1.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e++a+++HE+++PL a r + l + + ++ +
CP000804_3 263 AVGELAASVAHEINNPLYAARNSLYLVEQ---------DIPPDTPQ- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +l ++++e+ r+ r+i +++d+ r
CP000804_3 300 ----------RHFLTIAQNELGRIARIITRMRDFYRPARD 329

CP000804_3029: domain 1 of 1, from 420 to 485: score 38.6, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++ HE+++ L +++gyael + ++ e++
CP000804_3 420 AVGTFAAGIGHEFNNLLGGMLGYAELGRS--------TGDIAEKD-- 456

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l++i+++ +r + + + lL+++r +
CP000804_3 457 -----------HALDVIRQACQRGRVITSGLLTFARRSEH 485

CP000804_1740: domain 2 of 2, from 287 to 344: score 36.9, E = 4.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++ HELRTPLt+++++++l + +e +
CP000804_1 287 LKDQFIEHVGHELRTPLTSLSLALQL------------LTHQPELM- 320

peLRledpeyreyletilreaerllrLindlLdl<-*
r++ +++++++ +l++L+n++L l
CP000804_1 321 ----------RDLSHVVRNSILQLEALVNRVLLL 344


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-14 5 0|=
-13 28 3|*=
-12 136 98|======*===
-11 342 513|======================= *
-10 630 952|========================================== *
-9 834 983|======================================================== *
-8 756 736|=================================================*=
-7 618 464|==============================*===========
-6 371 267|=================*=======
-5 264 146|=========*========
-4 108 78|=====*==
-3 100 41|==*====
-2 40 21|=*=
-1 27 11|*=
0 10 5|*
1 8 3|*
2 3 1|*
3 1 0|=
> 4 49 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 522.9571
P(chi-square) = 0

Total sequences searched: 4330

Whole sequence top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 42
Satisfying E cutoff: 42
Total memory: 37K


Acknowledgements:

This research is funded by:

Developed by: