Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

1 accessions found for Roseiflexus castenholzii DSM 13941  

Data for CP000804  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000804.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000804_4328 CDS_5719492-5721435 67.8 4.4e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000804_4328 1/1 448 534 .. 1 94 [] 67.8 4.4e-19

Alignments of top-scoring domains:
CP000804_4328: domain 1 of 1, from 448 to 534: score 67.8, E = 4.4e-19
*->EIHHRVKNNLQvISSLLrLQarkfk..deevikdEVleaLrEsqnRV
E+HHRV+NNLQ+IS+LL +Q r+ ++d+ + aLr+s+ R+
CP000804_4 448 EMHHRVRNNLQTISALLTMQQRRLApnDRGA------LALRDSVARI 488

lSmAliHEeLYksedldtvdfseYlekLtenLfqsygvgsdgisLklDl<
+++A +H+ L d++ ++++ + ++e+ + s + i+++ +
CP000804_4 489 QAIAGVHNLLCHE-DIGVTTVDAVARQIAESARLSLSSPERPIHFE--I 534

-*

CP000804_4 - -


Histogram of all scores:
score obs exp (one = represents 19 sequences)
----- --- ---
-15 1 0|=
-14 11 0|=
-13 48 27|=*=
-12 229 284|============= *
-11 1063 791|=========================================*==============
-10 985 1024|==================================================== *
-9 721 865|====================================== *
-8 546 580|============================= *
-7 287 344|================ *
-6 236 192|==========*==
-5 88 103|=====*
-4 50 54|==*
-3 31 28|=*
-2 12 15|*
-1 12 7|*
0 4 4|*
1 2 2|*
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 172.9349
P(chi-square) = 1.198e-30

Total sequences searched: 4330

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: