Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermotoga lettingae TMO  

Data for CP000812  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000812.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000812_0980 CDS_1014657-1015922 104.4 1.5e-29 1
CP000812_1360 CDS_1436415-1437881 73.6 8.4e-21 1
CP000812_0378 CDS_413428-410837 61.7 1.9e-17 1
CP000812_0996 CDS_1029689-1030984 53.9 3.2e-15 1
CP000812_1685 CDS_1769741-1770448 50.7 2.6e-14 1
CP000812_0955 CDS_995302-996564 49.0 7.4e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000812_0980 1/1 187 254 .. 1 87 [] 104.4 1.5e-29
CP000812_1360 1/1 260 328 .. 1 87 [] 73.6 8.4e-21
CP000812_0378 1/1 646 712 .. 1 87 [] 61.7 1.9e-17
CP000812_0996 1/1 221 287 .. 1 87 [] 53.9 3.2e-15
CP000812_1685 1/1 27 89 .. 1 87 [] 50.7 2.6e-14
CP000812_0955 1/1 208 273 .. 1 87 [] 49.0 7.4e-14

Alignments of top-scoring domains:
CP000812_0980: domain 1 of 1, from 187 to 254: score 104.4, E = 1.5e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++n+sHELRTPLt+I gyae+Ll+ d+++++e+r
CP000812_0 187 MRREFVSNVSHELRTPLTSIHGYAETLLN--------DPDMDAETR- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++e+ r++rLindlLdl+r+e+g
CP000812_0 225 ----------DRFLKIIENESARMSRLINDLLDLERLESG 254

CP000812_1360: domain 1 of 1, from 260 to 328: score 73.6, E = 8.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++sHELRTPLtaI++y+e++l+ + ++ +++
CP000812_1 260 LKTDFIATVSHELRTPLTAIKAYTETILA-------DPESMDKDTL- 298

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+++++e+ +l++L+++lLd++++e+
CP000812_1 299 ----------TGFLQIVYKESLHLESLLDELLDFAKLEQK 328

CP000812_0378: domain 1 of 1, from 646 to 712: score 61.7, E = 1.9e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e+ a ++HELR+P+t+I g++ L++ +++ r
CP000812_0 646 LLGEMSARVAHELRNPITVIGGFLNRLKK---------NISDPQAR- 682

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +e++ l+++++++L++sr +
CP000812_0 683 ----------ERYLNILSNEVDNLQNIVSEILEFSRSARN 712

CP000812_0996: domain 1 of 1, from 221 to 287: score 53.9, E = 3.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+ ++sHEL+TPL++I+gyael++++++ ++
CP000812_0 221 AQNDFINDVSHELKTPLATIQGYAELMQKFSY-------NKEIVI-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +ti++ + l +L++ lL ls+ +
CP000812_0 259 -----------ESARTIQDTSIKLAKLVETLLSLSKPVTK 287

CP000812_1685: domain 1 of 1, from 27 to 89: score 50.7, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+ +++HEL TP+ta++g++++++e e +
CP000812_1 27 SKTFFVNAVAHELFTPITALLGLLQIAKE-------------GEYV- 59

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l ++++ ++r++r+i++l ls++e++
CP000812_1 60 ----------QETLGKMEKHLKRMQRIIEQLVLLSKLEQQ 89

CP000812_0955: domain 1 of 1, from 208 to 273: score 49.0, E = 7.4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef++++sH+LR+PL++I++ +e+ + s
CP000812_0 208 QLREFASSISHQLRNPLATIKAQLEVTMS---------RPESYSL-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ i r +e + ++ + lL ++r+ ++
CP000812_0 244 ----------KNDLNAIMRNVEKMIQITSGLLLIARAKHQ 273


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 1 0|=
-14 3 0|=
-13 10 1|*=
-12 56 46|======*=
-11 206 241|============================== *
-10 376 448|====================================================== *
-9 411 463|==========================================================*
-8 375 346|=================================================*====
-7 229 218|===============================*=
-6 140 125|=================*==
-5 93 69|=========*====
-4 57 36|=====*===
-3 23 19|==*=
-2 23 10|=*==
-1 16 5|*==
0 6 2|*
1 4 1|*
2 2 0|=
3 1 0|=
4 1 0|=
> 5 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 86.2147
P(chi-square) = 9.162e-14

Total sequences searched: 2040

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: