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Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Frankia sp. EAN1pec  

Data for CP000820  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000820.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000820_1033 CDS_1227681-1226212 87.1 4.4e-24 1
CP000820_6855 CDS_8518834-8515355 82.6 8.1e-23 1
CP000820_6376 CDS_7915410-7916882 80.3 3.6e-22 1
CP000820_0656 CDS_783662-787864 79.5 5.9e-22 1
CP000820_6455 CDS_8017788-8016280 79.4 6.4e-22 1
CP000820_6365 CDS_7898351-7900189 79.2 7.2e-22 1
CP000820_6983 CDS_8711815-8713380 76.1 5.6e-21 1
CP000820_1583 CDS_1930459-1931913 74.1 2.1e-20 1
CP000820_1701 CDS_2068414-2069640 72.8 5e-20 1
CP000820_5586 CDS_6924184-6922700 66.1 3.8e-18 1
CP000820_0589 CDS_695728-692912 63.5 2.1e-17 1
CP000820_6021 CDS_7479208-7477811 60.1 1.9e-16 1
CP000820_6812 CDS_8464441-8465643 57.0 1.4e-15 1
CP000820_3781 CDS_4587676-4586246 56.8 1.6e-15 1
CP000820_1095 CDS_1325146-1326888 53.0 2e-14 1
CP000820_6390 CDS_7930970-7929300 49.2 2.4e-13 1
CP000820_5199 CDS_6395699-6393672 48.9 3e-13 1
CP000820_6979 CDS_8703524-8705872 39.7 1.2e-10 1
CP000820_6986 CDS_8714670-8715791 38.2 3e-10 1
CP000820_0079 CDS_99000-97795 31.8 2.1e-08 1
CP000820_4297 CDS_5234635-5233400 30.0 6.4e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000820_1033 1/1 123 188 .. 1 87 [] 87.1 4.4e-24
CP000820_6855 1/1 716 784 .. 1 87 [] 82.6 8.1e-23
CP000820_6376 1/1 249 315 .. 1 87 [] 80.3 3.6e-22
CP000820_0656 1/1 883 951 .. 1 87 [] 79.5 5.9e-22
CP000820_6455 1/1 256 323 .. 1 87 [] 79.4 6.4e-22
CP000820_6365 1/1 328 395 .. 1 87 [] 79.2 7.2e-22
CP000820_6983 1/1 222 288 .. 1 87 [] 76.1 5.6e-21
CP000820_1583 1/1 249 315 .. 1 87 [] 74.1 2.1e-20
CP000820_1701 1/1 184 252 .. 1 87 [] 72.8 5e-20
CP000820_5586 1/1 260 323 .. 1 87 [] 66.1 3.8e-18
CP000820_0589 1/1 692 760 .. 1 87 [] 63.5 2.1e-17
CP000820_6021 1/1 148 214 .. 1 87 [] 60.1 1.9e-16
CP000820_6812 1/1 169 235 .. 1 87 [] 57.0 1.4e-15
CP000820_3781 1/1 233 299 .. 1 87 [] 56.8 1.6e-15
CP000820_1095 1/1 255 323 .. 1 87 [] 53.0 2e-14
CP000820_6390 1/1 282 350 .. 1 87 [] 49.2 2.4e-13
CP000820_5199 1/1 308 380 .. 1 87 [] 48.9 3e-13
CP000820_6979 1/1 273 339 .. 1 87 [] 39.7 1.2e-10
CP000820_6986 1/1 149 213 .. 1 87 [] 38.2 3e-10
CP000820_0079 1/1 179 245 .. 1 87 [] 31.8 2.1e-08
CP000820_4297 1/1 72 107 .. 40 87 .] 30.0 6.4e-08

Alignments of top-scoring domains:
CP000820_1033: domain 1 of 1, from 123 to 188: score 87.1, E = 4.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+a l HELRTPL+a++g+a+lL+ ++l+++
CP000820_1 123 SKDEFVARLGHELRTPLNAMLGFAQLLEL---------EPLTPDL-- 158

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e+i+ ++++++Li+d+Ldl+r++ag
CP000820_1 159 ----------HEDVERIITGGRHMQALIDDVLDLARLRAG 188

CP000820_6855: domain 1 of 1, from 716 to 784: score 82.6, E = 8.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +a lL +l+++q
CP000820_6 716 YKSEFLANMSHELRTPLNSLLILARLLAQ------NPTRNLTAKQ-- 754

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ++i+ ++ ll+Lind+Ldls+ eag
CP000820_6 755 ----------VEYAHVIHTAGSDLLQLINDILDLSKVEAG 784

CP000820_6376: domain 1 of 1, from 249 to 315: score 80.3, E = 3.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+Irgy++lL++ + ++ ++
CP000820_6 249 NLRRFAADASHELRTPLTSIRGYVDLLRA---------GMVPPAET- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++ +e+ r++ L++dlL l+ +++
CP000820_6 286 ----------DDTLRRVAEETARMQTLVDDLLYLAHLDEL 315

CP000820_0656: domain 1 of 1, from 883 to 951: score 79.5, E = 5.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++ +a+lL + d++ls +q+
CP000820_0 883 YKSEFLANMSHELRTPLNSLLILAKLLAD------NPDHNLSQKQI- 922

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ eti++++ ll Lind+Ldls+ eag
CP000820_0 923 -----------DFAETIHSAGSELLGLINDILDLSKVEAG 951

CP000820_6455: domain 1 of 1, from 256 to 323: score 79.4, E = 6.4e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++sHELRTPLt+Irgyae+ ++++ + ++e+
CP000820_6 256 RLRRFVGDASHELRTPLTSIRGYAEMFRRGA-------ASRPEDL-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++i++e+ r+++L++dlL l+r++++
CP000820_6 294 ----------AMVMRRIEEESARMSELVDDLLLLARLDHQ 323

CP000820_6365: domain 1 of 1, from 328 to 395: score 79.2, E = 7.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fla++sHELRTPL+aI+gyael ++ +++ +++
CP000820_6 328 RMRQFLADASHELRTPLAAISGYAELTRR-------TRDTVPPDV-- 365

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++e+ r+ +L++dlL l+r+++g
CP000820_6 366 ----------AYAMGRVESESARMTALVSDLLLLARLDSG 395

CP000820_6983: domain 1 of 1, from 222 to 288: score 76.1, E = 5.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HELRTP+t Irg++elL + ++ ++++r
CP000820_6 222 TQRAFVDDAGHELRTPITIIRGHLELLGD---------DPDDPDDR- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +l+e++r++r+++dlL l+++e +
CP000820_6 259 ----------AETVALVLDELDRMSRMVDDLLVLAKAERP 288

CP000820_1583: domain 1 of 1, from 249 to 315: score 74.1, E = 2.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++fl ++sHELRTPLta++g+ae+L + + + ++
CP000820_1 249 RQRRFLLSVSHELRTPLTAVQGFAEALAD---------GVTEPADT- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++il ea+rl+rL+ dlLdl+r++a
CP000820_1 286 ----------AGTGRIILGEARRLDRLVTDLLDLARLGAD 315

CP000820_1701: domain 1 of 1, from 184 to 252: score 72.8, E = 5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a+++HELR PLt+++g++ +Ll+ +++ ++eq+
CP000820_1 184 NRADLIATVAHELRSPLTSVKGFTATLLA-------RWDRFTDEQK- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+t+ +a+r rL+ +lLd sri+ag
CP000820_1 223 ----------KLMLNTVNTDADRVTRLLTELLDVSRIDAG 252

CP000820_5586: domain 1 of 1, from 260 to 323: score 66.1, E = 3.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++ HELRTP+t I+g++elL + ++e
CP000820_5 260 TQRAFVDDAGHELRTPITIISGHLELLSD-----------DPAER-- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + + +e++r++r+++dlL+l++++++
CP000820_5 294 ----------TETVALVTDELDRMSRMVDDLLTLAKARQP 323

CP000820_0589: domain 1 of 1, from 692 to 760: score 63.5, E = 2.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +l ++sH+LRTPL+a +++++ L+ + d +l++++
CP000820_0 692 VRTALLTAVSHDLRTPLAAAKAAVSCLRGY-------DITLTDDEE- 730

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t++++++ l rL+++lLd+sr++ag
CP000820_0 731 ----------AELLATADESLDKLTRLVENLLDMSRLQAG 760

CP000820_6021: domain 1 of 1, from 148 to 214: score 60.1, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ a+ +ae+ e + ++ +
CP000820_6 148 VRRDFVANVSHELKTPVGALHVLAEAVSE---------ASEDPVAV- 184

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++ +e+ rl rL++++ dlsr++
CP000820_6 185 ----------RRFASRMTHESTRLARLVQEIIDLSRLQGA 214

CP000820_6812: domain 1 of 1, from 169 to 235: score 57.0, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+a r+++e++ + e+ +
CP000820_6 169 SQRRFVANASHELRTPLAAQRTLVEVAMG---------RPGAEPAL- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++l r+++Li+ lL l+r + g
CP000820_6 206 ----------RELGTRLLTMNVRIEALIEGLLVLARSDRG 235

CP000820_3781: domain 1 of 1, from 233 to 299: score 56.8, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a++ HELRTPLt +++ +el+ + ++++ +++
CP000820_3 233 RDRAFVADAGHELRTPLTNLKAELELAGR---------PARTRDEL- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +e+erl rL + lL+l+r+++g
CP000820_3 270 ----------VDAVAGAAEETERLIRLSESLLTLARMDSG 299

CP000820_1095: domain 1 of 1, from 255 to 323: score 53.0, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+++a++sHE+RTPLt+Irg++ ++++ +++ ls+ q+
CP000820_1 255 IRSDLVATVSHEFRTPLTGIRGTLLTIRR-------RRDRLSDAQL- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++ ++rl+rL++++L+ + +
CP000820_1 294 ----------DDMLDSAVTYSDRLSRLLENMLTAATATGT 323

CP000820_6390: domain 1 of 1, from 282 to 350: score 49.2, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+ +sH+L PL + +++lL +++ +++ +e
CP000820_6 282 DLEQFAYVASHDLQEPLRKVASFCQLLSRRY-------GDQLDERG- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ + + a+r+++LindlL +sr +
CP000820_6 321 ----------TQYIHFAVDGAKRMQQLINDLLAFSRVGRT 350

CP000820_5199: domain 1 of 1, from 308 to 380: score 48.9, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++HELRTPLt++r+++elL + +e ++ +l
CP000820_5 308 RQRQLVDDAAHELRTPLTSLRTNIELLMR---------AETTPNRAL 345

peL.RledpeyreyletilreaerllrLindlLdlsrieag<-*
p+++R +l+ ++ + + l +L+n+l +l+r e +
CP000820_5 346 PAAdR------DALLRDVDAQMRELTALVNELIELARDEVP 380

CP000820_6979: domain 1 of 1, from 273 to 339: score 39.7, E = 1.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt+I gya l l+ +++l+e
CP000820_6 273 ALGQLAGGIAHDFNNLLTVIDGYATLVLA--------RGDLDEGA-- 309

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++++a r L ++lL +sr
CP000820_6 310 ----------HRDLTAVRDAAARATGLTSQLLAFSRTVDV 339

CP000820_6986: domain 1 of 1, from 149 to 213: score 38.2, E = 3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPL+ +++++++++ +l+ +
CP000820_6 149 EQQRFAANASHELRTPLAITQTLLDVARK----------DLNRDA-- 183

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++++++ r +L + lL lsr+ +
CP000820_6 184 ----------GELVDRLHLVNTRAIDLTEALLLLSRANQR 213

CP000820_0079: domain 1 of 1, from 179 to 245: score 31.8, E = 2.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPL+ r+ +el + +++ +++
CP000820_0 179 GQRRFVASASHELRTPLALERAVIELEAT--------KPAAHPDT-- 215

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l r +L+++lL+l+ +++
CP000820_0 216 ----------VHFADRLLAINTRNTDLVDRLLTLADGGNE 245

CP000820_4297: domain 1 of 1, from 72 to 107: score 30.0, E = 6.4e-08
*->elseeqrlpeLRledpeyreyletilreaerllrLindlLdlsriea
+l+++q ey ++i++++ ll+L+nd+Ldls+ ea
CP000820_4 72 NLTAKQ------------VEYAHVIHSAGADLLQLVNDILDLSKVEA 106

g<-*
g
CP000820_4 107 G 107


Histogram of all scores:
score obs exp (one = represents 24 sequences)
----- --- ---
-14 4 0|=
-13 59 5|*==
-12 281 164|======*=====
-11 661 852|============================ *
-10 1171 1581|================================================= *
-9 1412 1633|==========================================================*
-8 1319 1222|==================================================*====
-7 932 770|================================*======
-6 586 443|==================*======
-5 326 243|==========*===
-4 168 130|=====*=
-3 119 68|==*==
-2 71 36|=*=
-1 29 18|*=
0 17 9|*
1 3 5|*
2 5 2|*
3 1 1|*
4 1 0|=
5 0 0|
6 1 0|=
7 1 0|=
> 8 24 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1002.2596
P(chi-square) = 0

Total sequences searched: 7191

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: