Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
106 projects found  

1 accessions found for Frankia sp. EAN1pec  

Data for CP000820  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000820.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000820_0957 CDS_1132911-1134473 110.4 5.5e-31 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000820_0957 1/1 328 396 .. 1 75 [. 110.4 5.5e-31

Alignments of top-scoring domains:
CP000820_0957: domain 1 of 1, from 328 to 396: score 110.4, E = 5.5e-31
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLrLQ r++k e+ ++aLrEs++RV S
CP000820_0 328 EIHHRVKNNLQTVAALLRLQMRRTKADEA-----RDALRESVRRVTS 369

mAliHEeLYksedldtvdfseYlekLte<-*
+A +HE L+++ + ++v f+e + +t+
CP000820_0 370 IAVVHETLSQTLG-ESVPFDEIADQITS 396


Histogram of all scores:
score obs exp (one = represents 36 sequences)
----- --- ---
-15 7 0|=
-14 28 0|=
-13 105 45|=*=
-12 453 472|=============*
-11 2122 1315|====================================*======================
-10 1604 1701|============================================= *
-9 1114 1437|=============================== *
-8 787 964|====================== *
-7 405 572|============ *
-6 311 319|========*
-5 97 171|=== *
-4 74 90|==*
-3 44 47|=*
-2 16 24|*
-1 10 12|*
0 5 6|*
1 2 3|*
2 3 1|*
3 0 0|
4 1 0|=
5 1 0|=
6 0 0|
> 7 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 776.4159
P(chi-square) = 0

Total sequences searched: 7191

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: