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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Shewanella sediminis HAW-EB3  

Data for CP000821  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000821.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000821_0626 CDS_759500-763102 98.2 1.9e-27 1
CP000821_2859 CDS_3472750-3466109 97.4 3.2e-27 1
CP000821_1283 CDS_1526792-1523979 96.0 7.9e-27 1
CP000821_1379 CDS_1640500-1644906 91.9 1.1e-25 1
CP000821_2935 CDS_3561925-3558416 87.5 2.1e-24 2
CP000821_0290 CDS_342486-339691 86.5 3.9e-24 1
CP000821_0139 CDS_157789-154595 84.7 1.3e-23 1
CP000821_1751 CDS_2107456-2105705 78.7 6.3e-22 1
CP000821_1646 CDS_1973090-1968966 78.0 9.9e-22 1
CP000821_3293 CDS_4016379-4015060 74.3 1.2e-20 1
CP000821_3356 CDS_4097831-4094802 72.9 2.9e-20 1
CP000821_0985 CDS_1172388-1169572 69.9 2e-19 1
CP000821_2583 CDS_3139584-3141083 62.0 3.4e-17 1
CP000821_0283 CDS_334312-333272 61.2 6e-17 1
CP000821_0278 CDS_315877-314510 56.2 1.6e-15 1
CP000821_3060 CDS_3706982-3705867 54.0 6.4e-15 1
CP000821_0709 CDS_858799-857531 54.0 6.6e-15 1
CP000821_4398 CDS_5388391-5389674 51.8 2.7e-14 1
CP000821_3272 CDS_3982772-3984223 49.8 9.9e-14 1
CP000821_2003 CDS_2428931-2427516 49.6 1.1e-13 1
CP000821_0167 CDS_190611-189301 49.4 1.3e-13 1
CP000821_2491 CDS_3034873-3037089 48.6 2.2e-13 1
CP000821_0978 CDS_1164295-1163003 48.5 2.4e-13 1
CP000821_2714 CDS_3285778-3284507 48.2 2.8e-13 1
CP000821_0126 CDS_139868-141985 48.1 3e-13 1
CP000821_1029 CDS_1228426-1227131 47.9 3.5e-13 1
CP000821_1862 CDS_2244679-2248158 47.2 5.3e-13 1
CP000821_1178 CDS_1402674-1404752 46.4 9.2e-13 1
CP000821_0738 CDS_881831-883243 42.3 1.4e-11 1
CP000821_3130 CDS_3789169-3792654 41.3 2.6e-11 1
CP000821_1969 CDS_2384891-2383623 40.4 4.5e-11 1
CP000821_2905 CDS_3520824-3522665 39.8 6.7e-11 1
CP000821_2277 CDS_2760044-2761720 35.6 1.1e-09 1
CP000821_1795 CDS_2164932-2166524 30.0 4.1e-08 1
CP000821_4380 CDS_5373918-5372695 27.4 2.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000821_0626 1/1 690 755 .. 1 87 [] 98.2 1.9e-27
CP000821_2859 1/1 1481 1546 .. 1 87 [] 97.4 3.2e-27
CP000821_1283 1/1 301 366 .. 1 87 [] 96.0 7.9e-27
CP000821_1379 1/1 699 764 .. 1 87 [] 91.9 1.1e-25
CP000821_0290 1/1 407 472 .. 1 87 [] 86.5 3.9e-24
CP000821_2935 1/2 498 563 .. 1 87 [] 84.9 1.1e-23
CP000821_0139 1/1 418 483 .. 1 87 [] 84.7 1.3e-23
CP000821_1751 1/1 217 282 .. 1 87 [] 78.7 6.3e-22
CP000821_1646 1/1 664 732 .. 1 87 [] 78.0 9.9e-22
CP000821_3293 1/1 205 271 .. 1 87 [] 74.3 1.2e-20
CP000821_3356 1/1 500 565 .. 1 87 [] 72.9 2.9e-20
CP000821_0985 1/1 404 469 .. 1 87 [] 69.9 2e-19
CP000821_2583 1/1 278 342 .. 1 87 [] 62.0 3.4e-17
CP000821_0283 1/1 126 191 .. 1 87 [] 61.2 6e-17
CP000821_0278 1/1 240 302 .. 1 87 [] 56.2 1.6e-15
CP000821_3060 1/1 136 202 .. 1 87 [] 54.0 6.4e-15
CP000821_0709 1/1 224 289 .. 1 87 [] 54.0 6.6e-15
CP000821_4398 1/1 212 277 .. 1 87 [] 51.8 2.7e-14
CP000821_3272 1/1 237 302 .. 1 87 [] 49.8 9.9e-14
CP000821_2003 1/1 244 308 .. 1 87 [] 49.6 1.1e-13
CP000821_0167 1/1 231 291 .. 1 87 [] 49.4 1.3e-13
CP000821_2491 1/1 498 563 .. 1 87 [] 48.6 2.2e-13
CP000821_0978 1/1 200 269 .. 1 87 [] 48.5 2.4e-13
CP000821_2714 1/1 221 283 .. 5 87 .] 48.2 2.8e-13
CP000821_0126 1/1 467 534 .. 1 87 [] 48.1 3e-13
CP000821_1029 1/1 211 275 .. 1 87 [] 47.9 3.5e-13
CP000821_1862 1/1 798 864 .. 1 87 [] 47.2 5.3e-13
CP000821_1178 1/1 315 380 .. 1 87 [] 46.4 9.2e-13
CP000821_0738 1/1 249 316 .. 1 87 [] 42.3 1.4e-11
CP000821_3130 1/1 784 850 .. 1 87 [] 41.3 2.6e-11
CP000821_1969 1/1 221 290 .. 1 87 [] 40.4 4.5e-11
CP000821_2905 1/1 375 443 .. 1 87 [] 39.8 6.7e-11
CP000821_2277 1/1 341 402 .. 1 81 [. 35.6 1.1e-09
CP000821_1795 1/1 308 373 .. 1 87 [] 30.0 4.1e-08
CP000821_4380 1/1 197 261 .. 1 87 [] 27.4 2.2e-07

Alignments of top-scoring domains:
CP000821_0626: domain 1 of 1, from 690 to 755: score 98.2, E = 1.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000821_0 690 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTPQQ-- 725

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+++ +a++llr+ind+Ld+s+ieag
CP000821_0 726 ----------EDYLDKAGFSAQSLLRIINDILDFSKIEAG 755

CP000821_2859: domain 1 of 1, from 1481 to 1546: score 97.4, E = 3.2e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTP++aI+g+++l+l t l+ +q
CP000821_2 1481 AKSDFLANMSHEIRTPMNAIIGMSHLALQ---------TGLDRKQ-- 1516

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i++++e+ll+Lind+Ld+s+ eag
CP000821_2 1517 ----------RDYINKIQSASESLLALINDILDFSKVEAG 1546

CP000821_1283: domain 1 of 1, from 301 to 366: score 96.0, E = 7.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a+ Ll+ t+l + q
CP000821_1 301 IKSEFLANMSHELRTPLNGVIGFAKQLLK---------TPLHSSQ-- 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ti+++a ll +ind+Ld+s++eag
CP000821_1 337 ----------QDYINTIEKSATTLLGIINDILDFSKLEAG 366

CP000821_1379: domain 1 of 1, from 699 to 764: score 91.9, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTP+++++g++ lLl+ t+ls+ q
CP000821_1 699 AKSEFLASMSHEIRTPMNGVLGMLGLLLN---------TKLSDFQ-- 734

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ +++++++ae+ll Lind+Ld+s+i+ag
CP000821_1 735 ----------RRRVSIAQSSAESLLTLINDILDYSKIDAG 764

CP000821_0290: domain 1 of 1, from 407 to 472: score 86.5, E = 3.9e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ksefla +sHE+RTP+++++g++ lL++ t+l+ q
CP000821_0 407 SKSEFLACMSHEIRTPMNGVLGMLTLLER---------TALDQSQ-- 442

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+t++ +a+ ll Lind+Ld+s+ie+g
CP000821_0 443 ----------RNHLDTAQGSARNLLGLINDILDFSKIESG 472

CP000821_2935: domain 1 of 2, from 498 to 563: score 84.9, E = 1.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+R PL+a++g +el+l+ ++l+ eq
CP000821_2 498 AKSRFLATMSHEIRSPLNAVLGSVELMLD---------SKLNKEQ-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y +t+++++ ll+ ind+Ld+s+ieag
CP000821_2 534 ----------RIYAHTAKEAGTALLSTINDILDFSKIEAG 563

CP000821_0139: domain 1 of 1, from 418 to 483: score 84.7, E = 1.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak fla++sHE+RTP+++I+g+++lLl+ + l+ +q
CP000821_0 418 AKASFLATMSHEIRTPMNGIIGMIDLLLT---------SSLNRDQ-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ti++++ +ll++ind+Ld+s+ieag
CP000821_0 454 ----------RSMTNTIRDSSFSLLNIINDILDFSKIEAG 483

CP000821_1751: domain 1 of 1, from 217 to 282: score 78.7, E = 6.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++ HELRTPL++++g a+l+++ t +++ q
CP000821_1 217 TARDFVAMINHELRTPLSGLLGSADLMRD---------TQMTAHQ-- 252

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++e l+ +indlLd+s++ ag
CP000821_1 253 ----------QQLLKTMHQSGELLEVIINDLLDISKMNAG 282

CP000821_1646: domain 1 of 1, from 664 to 732: score 78.0, E = 9.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++I+ +++lL + ++l+++q+
CP000821_1 664 YKSEFLANMSHELRTPLNSILILSQLLAS------NKAGNLNDKQI- 703

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e + i +++ ll+Lin++Ldls+ eag
CP000821_1 704 -----------ESAKAINSSGSDLLSLINEVLDLSKVEAG 732

CP000821_3293: domain 1 of 1, from 205 to 271: score 74.3, E = 1.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHEL+TPLt+++gy+e+++ + + +
CP000821_3 205 MRKDFVANVSHELKTPLTVLQGYLEMMQG---------MAEPGSPN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e ++++++r+++++++lL lsrie
CP000821_3 242 ----------IKAVEQMQQQTNRMRSMVEQLLVLSRIEDS 271

CP000821_3356: domain 1 of 1, from 500 to 565: score 72.9, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++++g++ lL ++l+ q
CP000821_3 500 AKSLFLATMSHEIRTPLNGLLGTLTLLSH---------SDLPVAQ-- 535

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000821_3 536 ----------KQMLALSQYSGTLLQTVLNDILDFSRLEQG 565

CP000821_0985: domain 1 of 1, from 404 to 469: score 69.9, E = 2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+++sHELRTP++a++g ++lL +++++e
CP000821_0 404 AKSEFLSMMSHELRTPMNAVIGSLDLLTL---------SKQNPES-- 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++et+ +a l ++nd+Ld+ +ie+g
CP000821_0 440 ----------MSLIETATTSATNLIYILNDILDINKIESG 469

CP000821_2583: domain 1 of 1, from 278 to 342: score 62.0, E = 3.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a++sHELRTP++ ++g +e+L++ + ++
CP000821_2 278 ARQQWIADISHELRTPVAILQGELEALQD---------GIRDYSA-- 313

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++e++rl Lindl +ls + g
CP000821_2 314 -----------ESVNSLYQEVKRLAFLINDLHELSMSDIG 342

CP000821_0283: domain 1 of 1, from 126 to 191: score 61.2, E = 6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el ++q+
CP000821_0 126 AAQYLVRNLAHEIKNPLGGLRGAAQLLSR----------ELHDPQL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ i+++a+rl++L+++lL r +
CP000821_0 162 ----------NEFTDLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000821_0278: domain 1 of 1, from 240 to 302: score 56.2, E = 1.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++sHELRTPLt +++++ l+++ + + +
CP000821_0 240 SQQRLISDISHELRTPLTRLQLALALARK---------KGQESAE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+i eae+l+++i++lL+ls+ +
CP000821_0 276 -------------TERIGYEAEQLEKMISELLELSKVKLN 302

CP000821_3060: domain 1 of 1, from 136 to 202: score 54.0, E = 6.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPLta ++ya+ L + se r
CP000821_3 136 ALGKMVATLAHQVRTPLTAALLYASNLAS---------PRISESAR- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l++++nd+L +++ +++
CP000821_3 173 ----------SRFQKKLVDRLNELEHQVNDMLLMAKGRQQ 202

CP000821_0709: domain 1 of 1, from 224 to 289: score 54.0, E = 6.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPLt+I+g++ lL+ +e q
CP000821_0 224 QEQAFARYASHELRTPLTVIQGATWLLKQ---------KSEPEYQ-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i ++a +++ i+ lL l + e+
CP000821_0 260 ----------ARQRERIAKAATDMQHTIEALLSLVKQEQA 289

CP000821_4398: domain 1 of 1, from 212 to 277: score 51.8, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++ +++HE+RTP+ I+ ++++L + ++ ++q
CP000821_4 212 SNRNLTNAVAHEFRTPIFRIQCNLDMLDD---------SKVRPDQ-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le i+++++ l++++++lL +s++e
CP000821_4 248 ----------MPHLEGIQSDLNELNSMVEELLHFSKLERL 277

CP000821_3272: domain 1 of 1, from 237 to 302: score 49.8, E = 9.9e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+ ++ HE+RTPL+ I++++ lL++ + +++
CP000821_3 237 ENQIFAQAVPHEMRTPLSRIQLATGLLRK---------RCQQADE-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l+ i+ ++ +++L +++L++s++ +
CP000821_3 273 ----------RELLDNIDCYIDDIDELTRQVLTFSKLNTT 302

CP000821_2003: domain 1 of 1, from 244 to 308: score 49.6, E = 1.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPL+ +++lL++ ++++q
CP000821_2 244 NQERLLRDVSHELRTPLARQEIALHLLEK----------QATAQQ-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ +++ e++ +Li+ +L +sr+ +
CP000821_2 279 ----------MPLISRFKDQNEQMAKLIDSILNFSRLNNA 308

CP000821_0167: domain 1 of 1, from 231 to 291: score 49.4, E = 1.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000821_0 231 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++in++ + r +++
CP000821_0 262 ----------EYLKDGIVHDIEDMDAIINQFISYIRQDQE 291

CP000821_2491: domain 1 of 1, from 498 to 563: score 48.6, E = 2.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L + l+ +
CP000821_2 498 YLENMSSRLSHELRTPVAVVRSSLEHLGL---------QQLDKDS-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++++++ + rl+ ++n++ + +r+e+
CP000821_2 534 ----------RKYVDRAQEGVSRLSMILNNMSEATRLEES 563

CP000821_0978: domain 1 of 1, from 200 to 269: score 48.5, E = 2.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ + + s+ qr+
CP000821_0 200 NQKHLSNAVSHEIRTPLARLKFALALMPQYC-------KPDSDVQRR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ ++++++ +++L+++lL+++ +e++
CP000821_0 240 ----------TDFLNDMQQDVKEMENLLQELLTYASLESQ 269

CP000821_2714: domain 1 of 1, from 221 to 283: score 48.2, E = 2.8e-13
*->flanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrlpeLR
f++++sHELRTP++ ++ ++el +e + ++e
CP000821_2 221 FTRDVSHELRTPVAIVKNAVELYKE--------KNPITDES------ 253

ledpeyreyletilreaerllrLindlLdlsrieag<-*
++++++i +++ ++++ + lL l+r e+
CP000821_2 254 ------HRLIDRIADATIQMEQTVTTLLVLAREEHT 283

CP000821_0126: domain 1 of 1, from 467 to 534: score 48.1, E = 3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ el++ el +++ e+
CP000821_0 467 ALGELTAGIAHEINNPTAVILGNMELMKYEL-------GDRAEDV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000821_0 505 ----------EEEIDLVIQQVGRISTIIRSLLQYSRPGEF 534

CP000821_1029: domain 1 of 1, from 211 to 275: score 47.9, E = 3.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l +++HE+R PL+ + +++elL+e ++e +r
CP000821_1 211 TQRDLLHGVAHEFRSPLARMEFAIELLEE-----------ADENKR- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++r+++ l++L+ ++L +sr+++
CP000821_1 246 ----------SQLKGQLERSIKELDELVKQVLRYSRLQHD 275

CP000821_1862: domain 1 of 1, from 798 to 864: score 47.2, E = 5.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000821_1 798 SKSKFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDQEG-- 834

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ + ++++ +L+ dlLd+s++++g
CP000821_1 835 ----------KKTLSHVNSSLKIAGELLTDLLDISKLDSG 864

CP000821_1178: domain 1 of 1, from 315 to 380: score 46.4, E = 9.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ L +++g++el+ + s+e++
CP000821_1 315 AMGQLVGGIAHDFNNILGVLKGNLELMSL----------KSSDEKV- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl ++ ++ +r +L ++lL++sr e+
CP000821_1 351 ----------ERYLGIAFKACQRGTDLTRRLLQFSRQEQF 380

CP000821_0738: domain 1 of 1, from 249 to 316: score 42.3, E = 1.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ +++HE+++PL++ +++++ ++++ +el+e+q
CP000821_0 249 AIGHLAMGMAHEINNPLASSTLALDIFQRKS-------PELDEQQ-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e+i +er +++ +lL ++r g
CP000821_0 287 ----------LKYIERISLGIERASEISKELLAYARPAKG 316

CP000821_3130: domain 1 of 1, from 784 to 850: score 41.3, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+ l + sH+L +PL+a r+++++ ++ lse+q
CP000821_3 784 KKSQYLKACSHDLLQPLSAARLFSSAFVQ--------SSQLSEKQ-- 820

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++++ ++L+ dl ++srie+g
CP000821_3 821 ----------KQQIGYIDNSLKVANELLLDLNEISRIESG 850

CP000821_1969: domain 1 of 1, from 221 to 290: score 40.4, E = 4.5e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +fl+++sHELRTP++++r+++elL + + + +s++q
CP000821_1 221 REHDFLRYASHELRTPIAVMRTNIELLTK-----MNRVEGASDKQ-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+r++ + +L + lL l r ++
CP000821_1 261 ----------VTVLKRIDRASMTIGHLTEVLLWLGRDDSS 290

CP000821_2905: domain 1 of 1, from 375 to 443: score 39.8, E = 6.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HE+++PL+aIr ya+ ++ + + eq+
CP000821_2 375 VIGSLSASINHEINQPLAAIRSYAQNTQTLV-------SRNQLEQV- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ti++ ++rl +++ ++ ++r +g
CP000821_2 414 ----------SDNINTIISLTDRLAAIVGQFKSFTRKSQG 443

CP000821_2277: domain 1 of 1, from 341 to 402: score 35.6, E = 1.1e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++++++HEL++PL++Ir +++ +l l++eq
CP000821_2 341 LTGEMASGIAHELNQPLAGIRYLTQGCLY----------RLTPEQ-- 375

peLRledpeyreyletilreaerllrLindlLdl<-*
+e +l++++++++r ++ i +++++
CP000821_2 376 -------GELNSALNKAIEQVDRAQSTIKRFRQF 402

CP000821_1795: domain 1 of 1, from 308 to 373: score 30.0, E = 4.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e +++++H LR+PL+++ ++++ + s+e+r
CP000821_1 308 ELGEVTRGIAHSLRNPLHTVGLLSDGVVL----------ADSAEER- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +i++ + +++ i+ lL+ls e +
CP000821_1 344 ----------SQLILKIQQKISMMDKSIQSLLTLSSNEVN 373

CP000821_4380: domain 1 of 1, from 197 to 261: score 27.4, E = 2.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ +r +e L + +s e++
CP000821_4 197 AVRGATDNIAHDLRTPLSHLRIGLEQLPD-----------RSCEEL- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++ + ++++l+ + +L l+rie+g
CP000821_4 232 ----------PEACAILTEKLDHCLATFDAMLSLTRIEEG 261


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-16 1 0|=
-15 1 0|=
-14 6 0|=
-13 42 3|*==
-12 174 102|======*=====
-11 409 533|============================ *
-10 792 988|===================================================== *
-9 876 1021|==========================================================*
-8 762 764|==================================================*
-7 567 481|================================*=====
-6 348 277|==================*=====
-5 171 152|==========*=
-4 118 81|=====*==
-3 72 43|==*==
-2 54 22|=*==
-1 28 11|*=
0 10 6|*
1 7 3|*
2 3 1|*
3 5 0|=
4 1 0|=
5 1 0|=
6 0 0|
> 7 49 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 277.9805
P(chi-square) = 0

Total sequences searched: 4497

Whole sequence top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 35
Satisfying E cutoff: 35
Total memory: 35K


Acknowledgements:

This research is funded by:

Developed by: