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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

3 accessions found for Citrobacter koseri ATCC BAA-895  

Data for CP000822  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000822.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000822_4026 CDS_3848737-3851493 97.1 4.4e-27 1
CP000822_2698 CDS_2570938-2569643 92.7 7.7e-26 1
CP000822_4245 CDS_4039164-4042346 80.1 3e-22 1
CP000822_0529 CDS_535953-538799 79.4 4.6e-22 1
CP000822_2189 CDS_2083334-2081865 79.2 5.3e-22 1
CP000822_4485 CDS_4256390-4254054 78.9 6.3e-22 1
CP000822_0527 CDS_535739-533958 72.5 4.2e-20 1
CP000822_0216 CDS_222499-223980 71.3 9e-20 1
CP000822_0677 CDS_678178-676775 66.7 1.8e-18 1
CP000822_3001 CDS_2862495-2863868 65.7 3.5e-18 1
CP000822_4292 CDS_4087696-4089045 61.5 5.3e-17 1
CP000822_2546 CDS_2422417-2423868 59.7 1.7e-16 1
CP000822_2404 CDS_2281940-2284627 59.2 2.5e-16 1
CP000822_3055 CDS_2912366-2913415 59.0 2.7e-16 1
CP000822_4692 CDS_4426761-4425409 54.9 4e-15 1
CP000822_3650 CDS_3493233-3494288 45.4 1.9e-12 1
CP000822_1572 CDS_1561367-1562668 44.5 3.4e-12 1
CP000822_3892 CDS_3724538-3723126 38.7 1.6e-10 1
CP000822_2036 CDS_1934115-1932106 37.3 3.9e-10 1
CP000822_3687 CDS_3523924-3521642 34.8 2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000822_4026 1/1 292 357 .. 1 87 [] 97.1 4.4e-27
CP000822_2698 1/1 203 269 .. 1 87 [] 92.7 7.7e-26
CP000822_4245 1/1 585 652 .. 1 87 [] 80.1 3e-22
CP000822_0529 1/1 469 534 .. 1 87 [] 79.4 4.6e-22
CP000822_2189 1/1 267 335 .. 1 87 [] 79.2 5.3e-22
CP000822_4485 1/1 282 347 .. 1 87 [] 78.9 6.3e-22
CP000822_0527 1/1 373 438 .. 1 87 [] 72.5 4.2e-20
CP000822_0216 1/1 266 334 .. 1 87 [] 71.3 9e-20
CP000822_0677 1/1 240 304 .. 1 87 [] 66.7 1.8e-18
CP000822_3001 1/1 238 300 .. 1 87 [] 65.7 3.5e-18
CP000822_4292 1/1 236 302 .. 1 87 [] 61.5 5.3e-17
CP000822_2546 1/1 261 327 .. 1 87 [] 59.7 1.7e-16
CP000822_2404 1/1 664 731 .. 1 87 [] 59.2 2.5e-16
CP000822_3055 1/1 129 186 .. 1 79 [. 59.0 2.7e-16
CP000822_4692 1/1 233 293 .. 1 87 [] 54.9 4e-15
CP000822_3650 1/1 135 195 .. 1 87 [] 45.4 1.9e-12
CP000822_1572 1/1 211 271 .. 1 87 [] 44.5 3.4e-12
CP000822_3892 1/1 246 311 .. 1 87 [] 38.7 1.6e-10
CP000822_2036 1/1 448 516 .. 1 87 [] 37.3 3.9e-10
CP000822_3687 1/1 401 463 .. 1 87 [] 34.8 2e-09

Alignments of top-scoring domains:
CP000822_4026: domain 1 of 1, from 292 to 357: score 97.1, E = 4.4e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel+ q
CP000822_4 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNTTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000822_4 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000822_2698: domain 1 of 1, from 203 to 269: score 92.7, E = 7.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP000822_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QPLEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t++++++r++ L+ +lL+ls+iea
CP000822_2 240 ----------EKALHTMREQTHRMEGLVKQLLTLSKIEAA 269

CP000822_4245: domain 1 of 1, from 585 to 652: score 80.1, E = 3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efl+++sHE+RTP++aI+g++elL+ + + s+e+
CP000822_4 585 EKREFLSHMSHEIRTPVSAIMGFLELLQL-------SPARFSPED-- 622

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ + +++++ll+Li ++Ldl++ie+g
CP000822_4 623 ----------KASVDQAAQASRSLLKLIGEILDLEKIESG 652

CP000822_0529: domain 1 of 1, from 469 to 534: score 79.4, E = 4.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l+
CP000822_0 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KALPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000822_0 505 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000822_2189: domain 1 of 1, from 267 to 335: score 79.2, E = 5.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an+sH+LRTPLt+++gy+e+L ++ ++l+++++
CP000822_2 267 QRREFIANISHDLRTPLTSLLGYLETLSLKS-------ATLTPQET- 305

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl t+lr+++ ++L ++l +l+r+e+g
CP000822_2 306 ----------QQYLATALRQGHKVRHLSQQLFELARLEHG 335

CP000822_4485: domain 1 of 1, from 282 to 347: score 78.9, E = 6.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP000822_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTSEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000822_4 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP000822_0527: domain 1 of 1, from 373 to 438: score 72.5, E = 4.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a+++HE R+PLtaIrgy+++++ + + +
CP000822_0 373 TLGELMAGVAHEVRNPLTAIRGYVQIIRQ---------QINLPVH-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eyl+++l+e++++++ i++lLd+sr ++
CP000822_0 409 ----------QEYLSVVLKEIDSINKVIQQLLDFSRPRQS 438

CP000822_0216: domain 1 of 1, from 266 to 334: score 71.3, E = 9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000822_0 266 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++++++ l++Li++lLd+ r a
CP000822_0 305 ----------KEVVGILDDSSRNLQKLIEQLLDYNRKLAD 334

CP000822_0677: domain 1 of 1, from 240 to 304: score 66.7, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP000822_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000822_0 278 -------------VASLQAEVGTLTKLVDDLHQLSMSDEG 304

CP000822_3001: domain 1 of 1, from 238 to 300: score 65.7, E = 3.5e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+++sHELRTPLt +++ + lL++ +++
CP000822_3 238 TQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000822_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000822_4292: domain 1 of 1, from 236 to 302: score 61.5, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PLta++ +e+++ ++ +++ r
CP000822_4 236 RERQFTSDAAHELRSPLTALKVQTEVAQL---------SDDDPQAR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ +er rL+++lL+lsr+++
CP000822_4 273 ----------QKALMQLHTGIERATRLVDQLLTLSRLDSL 302

CP000822_2546: domain 1 of 1, from 261 to 327: score 59.7, E = 1.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HE+RTP+t + + +e++l +++s +++
CP000822_2 261 RQSNFSADIAHEIRTPITNLVTQTEIALS---------QTRSQKEL- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l + l+e r++++++d+L l++++++
CP000822_2 298 ----------EDVLYSNLEEFGRMSKMVSDMLFLAQADNN 327

CP000822_2404: domain 1 of 1, from 664 to 731: score 59.2, E = 2.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + ++++
CP000822_2 664 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASEGSPH-- 701

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000822_2 702 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 731

CP000822_3055: domain 1 of 1, from 129 to 186: score 59.0, E = 2.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000822_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000822_3 165 ----------LEYTKVIIEQADRLRNLVDRLL 186

CP000822_4692: domain 1 of 1, from 233 to 293: score 54.9, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP000822_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000822_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000822_3650: domain 1 of 1, from 135 to 195: score 45.4, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + ++
CP000822_3 135 NERLFTADVAHELRTPLAGVRLHLELLAK---------AH------- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP000822_3 166 ----------NVNVTPLIARLDQMMDSVSQLLQLARVGQS 195

CP000822_1572: domain 1 of 1, from 211 to 271: score 44.5, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ ls+++
CP000822_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LSAQE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000822_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP000822_3892: domain 1 of 1, from 246 to 311: score 38.7, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + ++q
CP000822_3 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQQPQQ-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e l+ + +++ L ++lL+ls
CP000822_3 281 ---------WHESLRAMSATLDSTILLTERLLQLSAVKRK 311

CP000822_2036: domain 1 of 1, from 448 to 516: score 37.3, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ ++e+
CP000822_2 448 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQTEQA-- 486

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l++++ ++r++++i+ l++++r +
CP000822_2 487 ----------RTTLSKAEGLINRIDAIIRSLRQFTRRAEL 516

CP000822_3687: domain 1 of 1, from 401 to 463: score 34.8, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el + +++
CP000822_3 401 AVGQLTGGLAHDFNNLLAVIIGSLELVSP---------DSPDAPR-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++l++aer L ++lL +sr ++
CP000822_3 437 -------------ITRALKAAERGALLTQRLLAFSRKQSL 463


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 9 0|=
-14 87 0|======
-13 195 3|*============
-12 336 114|=======*===============
-11 525 593|=================================== *
-10 838 1100|======================================================== *
-9 866 1136|==========================================================*
-8 766 850|==================================================== *
-7 537 536|===================================*
-6 349 308|====================*===
-5 219 169|===========*===
-4 107 90|=====*==
-3 54 47|===*
-2 33 25|=*=
-1 33 13|*==
0 7 6|*
1 8 3|*
2 9 1|*
3 1 0|=
4 0 0|
5 1 0|=
6 0 0|
7 0 0|
> 8 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 628.9208
P(chi-square) = 0

Total sequences searched: 5003

Whole sequence top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 20
Satisfying E cutoff: 20
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: