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Classification of phyla is from NCBI page
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3 accessions found for Citrobacter koseri ATCC BAA-895  

Data for CP000822  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000822.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000822_1258 CDS_1268587-1266791 79.7 4.1e-23 1
CP000822_0305 CDS_314873-313173 73.2 3.5e-21 1
CP000822_2744 CDS_2608758-2610299 68.2 9.9e-20 1
CP000822_0007 CDS_8121-6619 63.9 1.8e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000822_1258 1/1 390 458 .. 1 70 [] 79.7 4.1e-23
CP000822_0305 1/1 361 428 .. 1 70 [] 73.2 3.5e-21
CP000822_2744 1/1 315 380 .. 1 70 [] 68.2 9.9e-20
CP000822_0007 1/1 304 370 .. 1 70 [] 63.9 1.8e-18

Alignments of top-scoring domains:
CP000822_1258: domain 1 of 1, from 390 to 458: score 79.7, E = 4.1e-23
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ ++ pe re l +i
CP000822_1 390 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--ATLPESSRELLSQI 434

relarealaevRrllgdLR.paal<-*
r ++++ ++R+ll+++R ++
CP000822_1 435 RNELNTSWVQLRELLTTFRlQLTE 458

CP000822_0305: domain 1 of 1, from 361 to 428: score 73.2, E = 3.5e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r + ++d+ +a+ ++
CP000822_0 361 ERATIARELHDSLAQVLSYLRIQLTLLKRSI--PEDNLPAQSIMADF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
CP000822_0 406 SRALNDAYRQLRELLTTFRLTLQ 428

CP000822_2744: domain 1 of 1, from 315 to 380: score 68.2, E = 9.9e-20
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ +ARELHD++gQ+++ai +q++l++r ++dp++ ++a+ +i
CP000822_2 315 TRKNLARELHDEIGQNITAIQIQSQLVKR----ARDPAQTQAAASQI 357

relarealaevRrllgdLRpaal<-*
+lar+ +R+ll++LRp+al
CP000822_2 358 NDLARRIHHSTRQLLRQLRPPAL 380

CP000822_0007: domain 1 of 1, from 304 to 370: score 63.9, E = 1.8e-18
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
CP000822_0 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNGGVKQSGAHI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
CP000822_0 348 EQLSLGVYDAVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-15 4 0|=
-14 87 0|======
-13 192 0|============
-12 272 55|===*=============
-11 353 458|======================= *
-10 789 1063|================================================== *
-9 913 1208|==========================================================*
-8 686 931|=========================================== *
-7 600 585|====================================*=
-6 412 331|====================*=====
-5 297 177|===========*=======
-4 167 92|=====*=====
-3 99 47|==*====
-2 58 24|=*==
-1 31 12|*=
0 18 6|*=
1 10 3|*
2 6 1|*
3 1 0|=
> 4 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1378.3138
P(chi-square) = 0

Total sequences searched: 5003

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: