Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

1 accessions found for Prochlorococcus marinus str. MIT 9215  

Data for CP000825  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000825.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000825_1565 CDS_1362797-1364863 79.9 1.3e-22 1
CP000825_0292 CDS_265778-266914 27.1 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000825_1565 1/1 414 482 .. 1 87 [] 79.9 1.3e-22
CP000825_0292 1/1 131 197 .. 1 87 [] 27.1 1.2e-07

Alignments of top-scoring domains:
CP000825_1565: domain 1 of 1, from 414 to 482: score 79.9, E = 1.3e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f++n+sHELRTPL I+ y+e+L + ++d+ +eeq+
CP000825_1 414 AQNRFISNVSHELRTPLFNIKSYVETLHD------LKDQLSDEEQI- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l ++ +e++rl rL+nd+Ldlsr+e+g
CP000825_1 454 -----------EFLGIANSETDRLTRLVNDVLDLSRLESG 482

CP000825_0292: domain 1 of 1, from 131 to 197: score 27.1, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + + H+LR+PL+a+r+ya+lL ++l + ++
CP000825_0 131 YLKNQVNVIIHQLRNPLAALRTYAKLLIKRL-------GSDDDSI-- 168

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++e+++ e +++++ + +L+l +
CP000825_0 169 -----------AIVERMIIEQKQINQYMDAFLQLNSPIQL 197


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 20 0|===
-13 76 1|*==========
-12 167 45|======*=================
-11 269 235|=================================*=====
-10 379 436|======================================================= *
-9 316 450|============================================== *
-8 274 337|======================================== *
-7 217 212|==============================*
-6 116 122|=================*
-5 65 67|=========*
-4 33 35|====*
-3 16 18|==*
-2 9 9|=*
-1 6 5|*
0 7 2|*
1 3 1|*
2 1 0|=
> 3 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 392.3205
P(chi-square) = 0

Total sequences searched: 1983

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: