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Thermotogae
Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Serratia proteamaculans 568  

Data for CP000826  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000826.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000826_0786 CDS_882420-879700 95.4 1.3e-26 1
CP000826_1036 CDS_1145370-1146686 91.1 2.1e-25 1
CP000826_3256 CDS_3608581-3605708 80.2 2.6e-22 1
CP000826_4326 CDS_4811622-4809283 76.1 3.8e-21 1
CP000826_1501 CDS_1643785-1642319 72.3 4.5e-20 1
CP000826_3639 CDS_4042832-4041396 69.1 3.7e-19 1
CP000826_4794 CDS_5329737-5331110 67.6 1e-18 1
CP000826_1279 CDS_1415515-1412303 64.1 9.8e-18 1
CP000826_1493 CDS_1632081-1633505 64.1 9.9e-18 1
CP000826_4864 CDS_5410275-5411324 64.0 1e-17 1
CP000826_3880 CDS_4317282-4315864 60.6 9.3e-17 1
CP000826_1239 CDS_1371552-1368859 59.3 2.2e-16 1
CP000826_3439 CDS_3823151-3821823 56.4 1.5e-15 1
CP000826_3542 CDS_3933180-3934562 56.0 1.9e-15 1
CP000826_4603 CDS_5096799-5095420 54.8 4.2e-15 1
CP000826_3974 CDS_4425689-4424331 53.8 8.2e-15 1
CP000826_0475 CDS_528087-527026 52.8 1.6e-14 1
CP000826_3896 CDS_4329220-4330626 52.7 1.7e-14 1
CP000826_1022 CDS_1130979-1128367 50.1 8.9e-14 2
CP000826_4718 CDS_5231229-5233013 48.3 2.9e-13 1
CP000826_3327 CDS_3696810-3695392 46.2 1.1e-12 1
CP000826_2582 CDS_2848666-2849970 40.5 4.7e-11 1
CP000826_3576 CDS_3965741-3967525 37.6 3.1e-10 1
CP000826_4039 CDS_4494141-4495784 34.3 2.7e-09 1
CP000826_1060 CDS_1174670-1172913 29.0 8.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000826_0786 1/1 291 356 .. 1 87 [] 95.4 1.3e-26
CP000826_1036 1/1 203 269 .. 1 87 [] 91.1 2.1e-25
CP000826_3256 1/1 472 537 .. 1 87 [] 80.2 2.6e-22
CP000826_4326 1/1 282 347 .. 1 87 [] 76.1 3.8e-21
CP000826_1501 1/1 266 334 .. 1 87 [] 72.3 4.5e-20
CP000826_3639 1/1 252 320 .. 1 87 [] 69.1 3.7e-19
CP000826_4794 1/1 239 301 .. 1 87 [] 67.6 1e-18
CP000826_1279 1/1 576 638 .. 1 87 [] 64.1 9.8e-18
CP000826_1493 1/1 249 315 .. 1 87 [] 64.1 9.9e-18
CP000826_4864 1/1 129 194 .. 1 87 [] 64.0 1e-17
CP000826_3880 1/1 255 320 .. 1 87 [] 60.6 9.3e-17
CP000826_1239 1/1 665 732 .. 1 87 [] 59.3 2.2e-16
CP000826_3439 1/1 223 286 .. 1 87 [] 56.4 1.5e-15
CP000826_3542 1/1 234 298 .. 1 87 [] 56.0 1.9e-15
CP000826_4603 1/1 233 293 .. 1 87 [] 54.8 4.2e-15
CP000826_3974 1/1 239 305 .. 1 87 [] 53.8 8.2e-15
CP000826_0475 1/1 136 196 .. 1 87 [] 52.8 1.6e-14
CP000826_3896 1/1 241 306 .. 1 87 [] 52.7 1.7e-14
CP000826_4718 1/1 226 291 .. 1 87 [] 48.3 2.9e-13
CP000826_3327 1/1 247 312 .. 1 87 [] 46.2 1.1e-12
CP000826_1022 2/2 499 564 .. 1 87 [] 42.5 1.3e-11
CP000826_2582 1/1 211 271 .. 1 87 [] 40.5 4.7e-11
CP000826_3576 1/1 227 292 .. 1 87 [] 37.6 3.1e-10
CP000826_4039 1/1 189 253 .. 1 87 [] 34.3 2.7e-09
CP000826_1060 1/1 353 405 .. 1 73 [. 29.0 8.5e-08

Alignments of top-scoring domains:
CP000826_0786: domain 1 of 1, from 291 to 356: score 95.4, E = 1.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ +l+ te+s q
CP000826_0 291 IKSEFLANMSHELRTPLNGVIGFTRQMLK---------TEMSVTQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+r+a+ ll +ind+Ld+s++eag
CP000826_0 327 ----------TDYLQTIERSANNLLTIINDVLDFSKLEAG 356

CP000826_1036: domain 1 of 1, from 203 to 269: score 91.1, E = 2.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e++ + +el+ r
CP000826_1 203 ARRNFFANVSHELRTPLTVLQGYLEMMSD---------EELDGSLR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l t++++++r++ L+ +lL+lsriea
CP000826_1 240 ----------GKALGTMQEQTRRMDGLVKQLLTLSRIEAA 269

CP000826_3256: domain 1 of 1, from 472 to 537: score 80.2, E = 2.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ +l+
CP000826_3 472 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KALPQGV-- 507

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + +++ ll++i+d+Ld+s+ie++
CP000826_3 508 ----------DRLVNAMNNSSGLLLKIISDILDFSKIESE 537

CP000826_4326: domain 1 of 1, from 282 to 347: score 76.1, E = 3.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ tel++eq
CP000826_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TELNDEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+ +a l ++ nd+ ++ ++e
CP000826_4 318 ----------LKYLKTIHVSAITLGNIFNDIIEMDKLERR 347

CP000826_1501: domain 1 of 1, from 266 to 334: score 72.3, E = 4.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+an+sH+LRTPLt++ gy+e+L ++ + ls+ +r
CP000826_1 266 QRREFIANISHDLRTPLTSLHGYLETLSVKS-------ASLSDNDR- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++l +++ rL ++l +l+r+e g
CP000826_1 305 ----------QRYLEIALAQSRKVGRLAQELFELARLEYG 334

CP000826_3639: domain 1 of 1, from 252 to 320: score 69.1, E = 3.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ efl+++sHEL+TPL+++r +elL +e+ ++l+++q
CP000826_3 252 QRHEFLRHISHELKTPLASMREGTELLADEVA------GPLTSDQ-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + +++ ++++l++Li++lLd+ r a
CP000826_3 291 ----------KEVVTILDGSSRHLQQLIEQLLDYNRKLAD 320

CP000826_4794: domain 1 of 1, from 239 to 301: score 67.6, E = 1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++++++sHELRTPLt +++++ l+++ + +
CP000826_4 239 AQQRLISDISHELRTPLTRLQLATALMRR---------RHGEGRE-- 274

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL lsr ++
CP000826_4 275 -------------LERIETEAQRLDSMINDLLVLSRGQQK 301

CP000826_1279: domain 1 of 1, from 576 to 638: score 64.1, E = 9.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++sHELRTP++aI+g++el l+ ++e
CP000826_1 576 MKSKFLATVSHELRTPMHAILGLLELELK---------RQPTPEG-- 611

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +i+++a +ll+L+ndl d +r+e+g
CP000826_1 612 -------------LPVIYSSASSLLNLLNDLQDHARLETG 638

CP000826_1493: domain 1 of 1, from 249 to 315: score 64.1, E = 9.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a+l+HE+RTP+ a++g ++++l + +s e+
CP000826_1 249 RLTQFSADLAHEIRTPVGALMGQCQVALY---------QSRSVEE-- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ +l+ +e+er++r+++++L l+r+++g
CP000826_1 285 ---------YETLLSNNMDELERISRMVENILFLARAGEG 315

CP000826_4864: domain 1 of 1, from 129 to 194: score 64.0, E = 1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000826_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLAK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey+++i+++a+rl++L+++lL r ++
CP000826_4 165 ----------TEYTKVIIEQADRLRNLVDRLLGPQRPGQH 194

CP000826_3880: domain 1 of 1, from 255 to 320: score 60.6, E = 9.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg+aelL+e ++ +
CP000826_3 255 YIEQYVHTLTHELKSPLAAIRGAAELLQE---------QPPAATA-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i++++ r+++L++ lL +r+e+
CP000826_3 291 ----------QRFLTNIEQQSARIQQLVDKLLVQARLESR 320

CP000826_1239: domain 1 of 1, from 665 to 732: score 59.3, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l ++ ++ +
CP000826_1 665 LRNSLLAALSHDLRTPLTVLFGQAEILTLDL-------AAEGSNH-- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++++ + rL+n+lLd++ri++g
CP000826_1 703 ----------ATQASQIRQQVLSTTRLVNNLLDMARIQSG 732

CP000826_3439: domain 1 of 1, from 223 to 286: score 56.4, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++l ++sHELR PL+ +++++ l++ ++
CP000826_3 223 AREQLLHDVSHELRSPLARLQLAIGLARQNA---------------- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ l++i++ea rl+++i +lL lsr+e++
CP000826_3 254 -------GNVENSLQRIEHEAGRLDKMIGELLALSRAESN 286

CP000826_3542: domain 1 of 1, from 234 to 298: score 56.0, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a++sHELRTPL+++rg +e+L++ + + +
CP000826_3 234 MRRAVMADVSHELRTPLAVLRGELEALQD---------GVRQPTP-- 269

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++l e+ l +L++dl +ls + g
CP000826_3 270 -----------ASLSSLLAEVATLTKLVDDLHQLSLSDLG 298

CP000826_4603: domain 1 of 1, from 233 to 293: score 54.8, E = 4.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ + e+
CP000826_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMSA--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000826_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000826_3974: domain 1 of 1, from 239 to 305: score 53.8, E = 8.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a+r +e+ + + ++eq++
CP000826_3 239 RERRFTSDAAHELRSPLAALRVQTEVVQL----------AGDDEQMR 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l + ++r rL+++lL+lsr+++
CP000826_3 276 ----------EHALGNLTVGIDRATRLVDQLLTLSRLDSL 305

CP000826_0475: domain 1 of 1, from 136 to 196: score 52.8, E = 1.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELRTPL++Ir+++el+++++
CP000826_0 136 QERLFTADAAHELRTPLAGIRLHLELMEKQG---------------- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ +++l + +++lL l+r+++
CP000826_0 167 ----------VPQSGPLIKRIDQLMHTVEQLLMLARAGQD 196

CP000826_3896: domain 1 of 1, from 241 to 306: score 52.7, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTP++a+++ ++lL ++++e q
CP000826_3 241 REKRFMADAAHELRTPIAAVLAQLHLLTQ--------VADKTERQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++e +++ ++r +L ++l dl+++e++
CP000826_3 278 -----------EIIEDMQQGLDRAASLSRQLIDLAKLESE 306

CP000826_4718: domain 1 of 1, from 226 to 291: score 48.3, E = 2.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl ++ HELRT L +I+ ++++L + t+ s+e+
CP000826_4 226 TKNAFLGAIGHELRTSLQSIMSAIDVLVN---------TKVSAEH-- 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++++ +a++++++ dl d++ +++g
CP000826_4 262 ----------ADTFQRLETAAQQIESQMKDLTDYAHLDSG 291

CP000826_3327: domain 1 of 1, from 247 to 312: score 46.2, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+LRTPLt++++ + ++l+ +eq
CP000826_3 247 RQERFSADASHQLRTPLTVLKTQVGVALA----------SDKPEQ-- 281

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+re l + ++ +L ++lL lsr+ a
CP000826_3 282 ---------WRESLLAMSTTLDNTVALTDRLLYLSRLKAH 312

CP000826_1022: domain 2 of 2, from 499 to 564: score 42.5, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el +++++++
CP000826_1 499 AVGQLTGGLAHDFNNLLAVIIGSLELTTQ---------QTQDAQT-- 534

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++l++aer +L ++lL +sr +a
CP000826_1 535 ----------EQRIARALKAAERGAQLTQRLLAFSRKQAL 564

CP000826_2582: domain 1 of 1, from 211 to 271: score 40.5, E = 4.7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r + + + lse ++
CP000826_2 211 SKKQLIDGIAHELRTPLVRLRYRLAMSDN-----------LSESEQ- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000826_2 246 --------------QALNRDIGQLESLIDELLTYARLDRP 271

CP000826_3576: domain 1 of 1, from 227 to 292: score 37.6, E = 3.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fl ++sH+LR+P++a+ +++e++ +++ +
CP000826_3 227 DKNQFLTTASHDLRQPVHAMGFLIEAIIH---------KNRDVTLI- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l +++++++ + n lLdls+ie+g
CP000826_3 264 -----------PQLLDLQQSVRSVHLMFNSLLDLSKIESG 292

CP000826_4039: domain 1 of 1, from 189 to 253: score 34.3, E = 2.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fl l HELRT L aI+ +e++ + ++++ +
CP000826_4 189 NKNAFLGILGHELRTSLQAIISSVEVIIR----------KKDDTT-- 223

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+++++a ++r+ dl ++++ ++g
CP000826_4 224 ----------FNHFERLENAAMKMERQMKDLAEFAKVDNG 253

CP000826_1060: domain 1 of 1, from 353 to 405: score 29.0, E = 8.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr yae ++ + e+s+ q
CP000826_1 353 TLGEMASGFAHELNQPLAAIRHYAEGCRI--------RLERSDRQ-- 389

peLRledpeyreyletilreaerllr<-*
+e+l ++++ +++ +r
CP000826_1 390 ----------HELLPILEQIGQQAQR 405


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 4 0|=
-13 48 3|*==
-12 187 111|======*====
-11 441 579|========================== *
-10 796 1075|=============================================== *
-9 967 1110|========================================================= *
-8 856 831|================================================*==
-7 630 524|==============================*=======
-6 403 301|=================*======
-5 228 165|=========*====
-4 149 88|=====*===
-3 58 46|==*=
-2 40 24|=*=
-1 23 12|*=
0 17 6|*
1 8 3|*
2 2 1|*
3 3 0|=
4 1 0|=
5 1 0|=
6 1 0|=
> 7 28 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 332.5685
P(chi-square) = 0

Total sequences searched: 4891

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: