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Classification of phyla is from NCBI page
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132 projects found  

6 accessions found for Dinoroseobacter shibae DFL 12  

Data for CP000830  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000830.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000830_3330 CDS_3515378-3513033 95.3 1e-26 1
CP000830_3316 CDS_3497022-3499481 90.9 1.8e-25 1
CP000830_2692 CDS_2869501-2871093 83.8 1.8e-23 1
CP000830_1525 CDS_1592488-1593549 80.3 1.8e-22 1
CP000830_1401 CDS_1461184-1463877 78.8 4.9e-22 1
CP000830_2267 CDS_2408494-2405708 71.3 6.3e-20 1
CP000830_0211 CDS_209376-207658 67.2 9.2e-19 1
CP000830_0447 CDS_436086-437696 66.9 1.1e-18 1
CP000830_2660 CDS_2832817-2834847 63.5 1.1e-17 1
CP000830_1568 CDS_1643399-1642326 52.0 1.8e-14 1
CP000830_1914 CDS_2006027-2007346 50.0 7e-14 1
CP000830_1637 CDS_1708274-1705935 48.8 1.5e-13 1
CP000830_0466 CDS_452199-454475 45.4 1.4e-12 1
CP000830_1073 CDS_1107811-1109568 45.3 1.5e-12 1
CP000830_1566 CDS_1640900-1638597 44.8 2e-12 1
CP000830_1190 CDS_1238915-1237047 44.0 3.5e-12 1
CP000830_3416 CDS_3612224-3613615 42.8 7.6e-12 1
CP000830_2551 CDS_2733766-2736072 34.3 2e-09 1
CP000830_0512 CDS_499843-498944 33.4 3.6e-09 1
CP000830_2483 CDS_2653900-2655261 31.0 1.7e-08 1
CP000830_0334 CDS_322301-320898 30.3 2.6e-08 1
CP000830_1886 CDS_1970454-1973216 30.2 2.9e-08 1
CP000830_3109 CDS_3292103-3293476 28.8 7.2e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000830_3330 1/1 388 453 .. 1 87 [] 95.3 1e-26
CP000830_3316 1/1 211 276 .. 1 87 [] 90.9 1.8e-25
CP000830_2692 1/1 150 215 .. 1 87 [] 83.8 1.8e-23
CP000830_1525 1/1 115 182 .. 1 87 [] 80.3 1.8e-22
CP000830_1401 1/1 671 737 .. 1 87 [] 78.8 4.9e-22
CP000830_2267 1/1 440 505 .. 1 87 [] 71.3 6.3e-20
CP000830_0211 1/1 343 408 .. 1 87 [] 67.2 9.2e-19
CP000830_0447 1/1 305 368 .. 1 87 [] 66.9 1.1e-18
CP000830_2660 1/1 309 374 .. 1 87 [] 63.5 1.1e-17
CP000830_1568 1/1 128 192 .. 1 87 [] 52.0 1.8e-14
CP000830_1914 1/1 228 286 .. 1 87 [] 50.0 7e-14
CP000830_1637 1/1 396 462 .. 1 87 [] 48.8 1.5e-13
CP000830_0466 1/1 370 435 .. 1 87 [] 45.4 1.4e-12
CP000830_1073 1/1 361 429 .. 1 87 [] 45.3 1.5e-12
CP000830_1566 1/1 508 579 .. 1 87 [] 44.8 2e-12
CP000830_1190 1/1 392 460 .. 1 87 [] 44.0 3.5e-12
CP000830_3416 1/1 211 271 .. 1 87 [] 42.8 7.6e-12
CP000830_2551 1/1 546 616 .. 1 87 [] 34.3 2e-09
CP000830_0512 1/1 78 140 .. 1 79 [. 33.4 3.6e-09
CP000830_2483 1/1 252 310 .. 1 87 [] 31.0 1.7e-08
CP000830_0334 1/1 242 306 .. 1 87 [] 30.3 2.6e-08
CP000830_1886 1/1 550 616 .. 1 87 [] 30.2 2.9e-08
CP000830_3109 1/1 238 307 .. 1 87 [] 28.8 7.2e-08

Alignments of top-scoring domains:
CP000830_3330: domain 1 of 1, from 388 to 453: score 95.3, E = 1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +fla++sHE+RTPL++I+g+++++l ++l++e+
CP000830_3 388 AKAQFLAMISHEIRTPLNGIIGMSDVMLS---------GPLDPEH-- 423

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+til ++e ll +ind+Ldls++eag
CP000830_3 424 ----------RGNLQTILASGEGLLTIINDILDLSKLEAG 453

CP000830_3316: domain 1 of 1, from 211 to 276: score 90.9, E = 1.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTP++++ +++elL e ++l+eeq
CP000830_3 211 AKSAFLANMSHELRTPMNGVVAMSELLNE---------SALDEEQ-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+eti++++e ll +ind+Ld+s++ea+
CP000830_3 247 ----------ALYVETIRKSGEALLVIINDVLDYSKMEAE 276

CP000830_2692: domain 1 of 1, from 150 to 215: score 83.8, E = 1.8e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP++aI+g+a+lL+ ++l+e+
CP000830_2 150 AKSRFLAAMSHEIRTPMNAILGFAQLLRL---------SDLDEKR-- 185

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ i+ ++ +l +L+ dlLdls +e+g
CP000830_2 186 ----------RGHVDAIIAAGGQLMNLLTDLLDLSHMETG 215

CP000830_1525: domain 1 of 1, from 115 to 182: score 80.3, E = 1.8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLta++g++++L+ +++++ ++
CP000830_1 115 MRRDFVANVSHELRTPLTALMGFIDTLQG---------PARDDAAAR 152

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ rea r++rL+ dlL lsr e
CP000830_1 153 ----------ARFLGVMAREAGRMNRLVGDLLSLSRVEFS 182

CP000830_1401: domain 1 of 1, from 671 to 737: score 78.8, E = 4.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ fl+ +sHELRTP+t+Ir ++e+L + l +e r
CP000830_1 671 QKDAFLSQISHELRTPMTSIRSFSEILMQ---------GRLEPEVR- 707

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y ++i++e+ rl rL++dlLdls +e+g
CP000830_1 708 ----------RRYSSIIHDESLRLTRLLDDLLDLSVLENG 737

CP000830_2267: domain 1 of 1, from 440 to 505: score 71.3, E = 6.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla +sHE+RTPL++I+g+++lL++ ++ ++e
CP000830_2 440 SKSAFLARMSHEIRTPLNGIIGMLDLLEA---------ETEDPER-- 475

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++t+l++a+ l+++ nd+L+++ e+
CP000830_2 476 ----------KARTKTALSSARDLREITNDILTFASGETT 505

CP000830_0211: domain 1 of 1, from 343 to 408: score 67.2, E = 9.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HE+++PL+++r ++ +L+ +++ ++
CP000830_0 343 ANEQFAADVAHEIKNPLASLRSATGTLRV---------AKREDQR-- 378

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le+i+++++rl+rL++d+ sr++++
CP000830_0 379 ----------QRLLEVIEHDVRRLDRLVSDISNASRLDSE 408

CP000830_0447: domain 1 of 1, from 305 to 368: score 66.9, E = 1.1e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a++sHELRTPLt+I++ a++ + s + +
CP000830_0 305 DRRRFFADVSHELRTPLTVILMEAQIGRQ------------SIPAA- 338

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ti+ aerl+r i+dlL l+r e+g
CP000830_0 339 ----------ADAFATIEARAERLNRKIDDLLRLARSETG 368

CP000830_2660: domain 1 of 1, from 309 to 374: score 63.5, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+f+a++sH+L +PL+a ++y+++L +e +e +
CP000830_2 309 SKSRFVAAASHDLLQPLSAAKLYVSALDG---------PETTEAT-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ ++++r++ + +++i+ lLd+s++eag
CP000830_2 345 ----------REIAHKAHRALLSVENIIDALLDISKLEAG 374

CP000830_1568: domain 1 of 1, from 128 to 192: score 52.0, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ +l+HE+++PL++I g+a+lL + +ls e+
CP000830_1 128 SAIGMAEMLAHEIKNPLAGITGAAQLLGM----------NLSNED-- 162

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+++ i e++r+ +L++++ ++ ++ +
CP000830_1 163 ----------RELTDLIVAESHRIVKLLEQVEQFGNLRPP 192

CP000830_1914: domain 1 of 1, from 228 to 286: score 50.0, E = 7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l+++sH+LRTPLt +++ +++L +++
CP000830_1 228 QRTMMLSGVSHDLRTPLTRMQLELSMLPP-------------SPE-- 259

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ ++rL+ +Ld++r++a
CP000830_1 260 -------------VAALEQDVQDMSRLLTTFLDFARADAL 286

CP000830_1637: domain 1 of 1, from 396 to 462: score 48.8, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI+g+++lLl ++++++++
CP000830_1 396 AIGQLAGGVAHDFNNLLTAISGHCDLLLL--------RHDQGDPE-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l i + a+r +L+ +lL +sr ++
CP000830_1 433 ----------YGDLVQINQNANRAASLVGQLLAFSRKQTL 462

CP000830_0466: domain 1 of 1, from 370 to 435: score 45.4, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +P++a ++++++L+e +++
CP000830_0 370 SKTRFLAAASHDLLQPINAAKLLISTLQE---------ATRETSF-- 405

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++++ + + ++L+ lLd+sr+e+
CP000830_0 406 ----------QPMVKRLKGAFSSAENLLHSLLDISRLESA 435

CP000830_1073: domain 1 of 1, from 361 to 429: score 45.3, E = 1.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ a++sHEL++PL+a+++y+ ++ l ++++e
CP000830_1 361 ALGEMSAAVSHELNQPLAAMKTYLAGARLLLQ------RKRPDES-- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i++ ++r+ ++ ++l ++r ++
CP000830_1 400 ----------LSSFARIDDLIDRMGKITRQLKSFARKGED 429

CP000830_1566: domain 1 of 1, from 508 to 579: score 44.8, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ ++ ++HE+++PLt I++ ae +++++ +++ e+
CP000830_1 508 AWGDVARRIAHEIKNPLTPIQLSAERMKRKF-------GPRLGEDG- 546

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
p+L e+ ++i+r++ l+r+++++ ++r+ ++
CP000830_1 547 PAL-------VELSDVIIRQTADLRRIVDEFSKFARMPEP 579

CP000830_1190: domain 1 of 1, from 392 to 460: score 44.0, E = 3.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+lsHE+++PL+a++ yae + ++ld ++ +e
CP000830_1 392 ALGQMSAALSHEFNQPLAAVKSYAENAMTFLD------RDRVPEA-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i ++r+ ++ l+ ++r ++
CP000830_1 431 ----------RENVTRISAMTDRMASISKHLRNFARRPQE 460

CP000830_3416: domain 1 of 1, from 211 to 271: score 42.8, E = 7.6e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +a+++HEL TPL++I++ ++ L e el ++ +
CP000830_3 211 DLGGVVAAAAHELGTPLATIKLVSQELAE----------ELEDPIL- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re e i+++a+r++++++ + +ag
CP000830_3 247 ----------REDAELIRDQADRCRDILRSM-----GRAG 271

CP000830_2551: domain 1 of 1, from 546 to 616: score 34.3, E = 2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++ +l+HEL++PLtaI ++++++ e+++ +
CP000830_2 546 MMGELATGLAHELNQPLTAITQNVDAAQL--------TIEKTPNRMN 584

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ r +l i++ a++ ++i+ l+ l r +++
CP000830_2 585 DV--------RALLGEIDDHAHQAADIIRALRALVRKDEN 616

CP000830_0512: domain 1 of 1, from 78 to 140: score 33.4, E = 3.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ +++HEL++PLt+I+++ae ++ +s++++
CP000830_0 78 QLGELSGAIAHELKQPLTSILMNAESGRA--------LLRQSPPDL- 115

peLRledpeyreyletilreaerllrLindlL<-*
+e++e+le i ++ +r i++l+
CP000830_0 116 -------REIAEILEDIANDDRRAAGVIDNLR 140

CP000830_2483: domain 1 of 1, from 252 to 310: score 31.0, E = 1.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++a++ H+LRTP+t++r ae+ +
CP000830_2 252 ERMRMIAAIGHDLRTPMTSLRIRAEMVDD------------------ 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e + r ++ + + + l ++r ++
CP000830_2 281 ----------AKQREAMVRTLDEMTVMADGLVSYARHGQD 310

CP000830_0334: domain 1 of 1, from 242 to 306: score 30.3, E = 2.6e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +a +sH+LR+ Lt+ +++a+ +++ +e + q
CP000830_0 242 QLGSAVAKISHDLRNVLTVAQLLADRMER---------SEDPTVQ-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ r++ r +L + L + ++e+
CP000830_0 278 -----------KAAPKLVRSISRAVNLCEGTLAFGKAEEL 306

CP000830_1886: domain 1 of 1, from 550 to 616: score 30.2, E = 2.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++a+++H++++ L+aI g a l+ +++l++
CP000830_1 550 ATAQLTAGIAHDFNNLLSAINGSATLIGL--------EENLTDTL-- 586

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++ + rL+n+lLd+ +
CP000830_1 587 ----------KAHVNRISTAGTQAARLVNRLLDIGARHEA 616

CP000830_3109: domain 1 of 1, from 238 to 307: score 28.8, E = 7.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a ++H RTPL+ +r+ ae+ + + ++e r+
CP000830_3 238 RSEDFIAEAAHRVRTPLAIVRTQAEIGMR---------RAETPENRQ 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ re ++ i++ ++ +L++ + r+++
CP000830_3 276 NL--------REVIRAIDETSRTAGQLLDHAMVSFRADSL 307


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-14 2 0|=
-13 37 2|*==
-12 136 81|======*====
-11 298 424|======================= *
-10 635 786|================================================= *
-9 719 812|======================================================== *
-8 669 608|==============================================*=====
-7 453 383|=============================*=====
-6 260 220|================*===
-5 166 121|=========*===
-4 82 64|====*==
-3 44 34|==*=
-2 25 17|=*
-1 16 9|*=
0 4 4|*
1 2 2|*
2 2 1|*
3 1 0|=
4 1 0|=
> 5 25 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 170.7494
P(chi-square) = 8.272e-31

Total sequences searched: 3577

Whole sequence top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 23
Satisfying E cutoff: 23
Total memory: 30K


Acknowledgements:

This research is funded by:

Developed by: