Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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39 projects found  

10 accessions found for Acaryochloris marina MBIC11017  

Data for CP000840  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000840.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000840_0023 CDS_23424-26213 96.8 4e-28 1
CP000840_0345 CDS_251017-253761 96.2 5.6e-28 1
CP000840_0014 CDS_12657-10624 90.5 2.3e-26 1
CP000840_0285 CDS_216623-218092 73.5 1.6e-21 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000840_0023 1/1 418 484 .. 1 87 [] 96.8 4e-28
CP000840_0345 1/1 452 518 .. 1 87 [] 96.2 5.6e-28
CP000840_0014 1/1 183 249 .. 1 87 [] 90.5 2.3e-26
CP000840_0285 1/1 270 333 .. 1 87 [] 73.5 1.6e-21

Alignments of top-scoring domains:
CP000840_0023: domain 1 of 1, from 418 to 484: score 96.8, E = 4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHELRTPL+aI+g+++lL + d++l+ q
CP000840_0 418 AKSAFLANMSHELRTPLNAILGFSQLLAR--------DENLTLSQ-- 454

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++i r++ +ll+Lind+L++s+ieag
CP000840_0 455 ----------KQNLNSINRSGSHLLNLINDVLEMSKIEAG 484

CP000840_0345: domain 1 of 1, from 452 to 518: score 96.2, E = 5.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks f+an+sHELRTPL++I+gya++L++ +++ s++
CP000840_0 452 AKSLFIANMSHELRTPLNGILGYAQVLER--------SPTISDKA-- 488

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i++++ +ll +ind+Ldls+ieag
CP000840_0 489 ----------QQQVHIIHKCGTHLLGMINDILDLSKIEAG 518

CP000840_0014: domain 1 of 1, from 183 to 249: score 90.5, E = 2.3e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+f+an+sHE+RTPL+aI+g+++lLl+ d +++q
CP000840_0 183 AKSKFIANMSHEFRTPLNAIMGFSQLLLR--------DRRITPDQ-- 219

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i+r++e+ll+L+n++ +ls+ie g
CP000840_0 220 ----------QSRLDVIYRSGEHLLSLVNEVITLSKIEDG 249

CP000840_0285: domain 1 of 1, from 270 to 333: score 73.5, E = 1.6e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ ++ HELRTP+t+Irg++el+ + + eq
CP000840_0 270 SQRRFVNDAGHELRTPITVIRGHLELIGD-----------DPQEQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +e +l+e++r+ rL+nd+ l++ e++
CP000840_0 304 ----------QETIELVLDELDRMGRLVNDMVALAKSEHP 333


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-15 3 0|==
-14 11 0|======
-13 33 0|=================
-12 43 8|===*==================
-11 38 42|=================== *
-10 62 79|=============================== *
-9 58 82|============================= *
-8 48 61|======================== *
-7 23 38|============ *
-6 23 22|==========*=
-5 2 12|= *
-4 8 6|==*=
-3 0 3| *
-2 3 1|*=
-1 1 0|=
> 0 6 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 167.0850
P(chi-square) = 1.033e-32

Total sequences searched: 362

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: