Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

10 accessions found for Acaryochloris marina MBIC11017  

Data for CP000840  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000840.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000840_0016 CDS_14446-15729 74.4 1.1e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000840_0016 1/1 219 286 .. 1 70 [] 74.4 1.1e-22

Alignments of top-scoring domains:
CP000840_0016: domain 1 of 1, from 219 to 286: score 74.4, E = 1.1e-22
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+R+AR++HDs+g++L+ai++qle a + ++d ++a ea++ +
CP000840_0 219 ERNRLARDIHDSLGHHLAAINIQLEKASAYR--ERDSDRAYEAVKHA 263

relarealaevRrllgdLRpaal<-*
+e++++al++vR+ ++ LR +
CP000840_0 264 QETVQDALKDVRASVSSLRQEGI 286


Histogram of all scores:
score obs exp (one = represents 2 sequences)
----- --- ---
-14 16 0|========
-13 47 0|========================
-12 27 4|=*============
-11 37 33|================*==
-10 58 76|============================= *
-9 64 87|================================ *
-8 30 67|=============== *
-7 28 42|============== *
-6 20 23|========== *
-5 19 12|=====*====
-4 5 6|==*
-3 6 3|=*=
-2 2 1|*
-1 0 0|
0 1 0|=
1 0 0|
> 2 2 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 41.0257
P(chi-square) = 8.005e-07

Total sequences searched: 362

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: