Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
39 projects found  

10 accessions found for Acaryochloris marina MBIC11017  

Data for CP000841  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000841.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000841_0196 CDS_164110-159461 47.6 2.6e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000841_0196 1/1 1166 1233 .. 1 87 [] 47.6 2.6e-14

Alignments of top-scoring domains:
CP000841_0196: domain 1 of 1, from 1166 to 1233: score 47.6, E = 2.6e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++++H+L++ Lt I g a+lL +l +++se+
CP000841_0 1166 SIGALASGIAHDLNNILTPIYGVAQLLPLQL-------PNASEQI-- 1203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e+++ +a+r ++Li ++L +sr g
CP000841_0 1204 ----------QHQFEILQTCAQRGSKLITQVLSFSRGADG 1233


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-15 2 0|==
-14 7 0|=======
-13 12 0|============
-12 28 6|=====*======================
-11 40 32|===============================*========
-10 41 60|========================================= *
-9 38 61|====================================== *
-8 33 46|================================= *
-7 29 29|============================*
-6 16 16|===============*
-5 10 9|========*=
-4 9 4|===*=====
-3 4 2|=*==
-2 1 1|*
-1 0 0|
> 0 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 96.9987
P(chi-square) = 4.49e-18

Total sequences searched: 273

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: