Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000847  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000847.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000847_0313 CDS_318835-320328 83.5 8e-24 1
CP000847_0586 CDS_581173-579911 61.7 1.2e-17 1
CP000847_0885 CDS_868922-867123 48.2 7.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000847_0313 1/1 268 333 .. 1 87 [] 83.5 8e-24
CP000847_0586 1/1 212 270 .. 1 87 [] 61.7 1.2e-17
CP000847_0885 1/1 371 441 .. 1 87 [] 48.2 7.7e-14

Alignments of top-scoring domains:
CP000847_0313: domain 1 of 1, from 268 to 333: score 83.5, E = 8e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L + e+
CP000847_0 268 SNTKFFANISHELRTPLNAIIGFSEILMS---------ERDAEKS-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y++ i +++++ll++ind+Ldls++ a
CP000847_0 304 ----------KNYIKDINDAGKHLLSMINDILDLSKASAD 333

CP000847_0586: domain 1 of 1, from 212 to 270: score 61.7, E = 1.2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el++e +e+
CP000847_0 212 KRTTMLAMISHDLRTPLTRMKLQLELMEE-------------SEE-- 243

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ ++++in Ld+++ e+
CP000847_0 244 -------------IEGLKQDILTMQQMINSYLDFAKGEST 270

CP000847_0885: domain 1 of 1, from 371 to 441: score 48.2, E = 7.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+++ ++e +
CP000847_0 371 AWSDVAKKVAHEIKNPLTPILLASERLLKKF------SPEIKDRV-- 409

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e++ yl+ i+r ++ + ++++++ ++r+ a
CP000847_0 410 --------EFENYLKMIIRHTNDIKNIVSEFVLFARLPAT 441


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 7 0|==
-14 25 0|=======
-13 64 0|================
-12 133 28|======*===========================
-11 169 149|=====================================*=====
-10 215 276|====================================================== *
-9 217 285|======================================================= *
-8 163 214|========================================= *
-7 100 134|========================= *
-6 64 77|================ *
-5 46 42|==========*=
-4 22 22|=====*
-3 15 12|==*=
-2 8 6|=*
-1 4 3|*
0 3 1|*
1 0 0|
> 2 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 435.6331
P(chi-square) = 0

Total sequences searched: 1259

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: