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Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

1 accessions found for Rickettsia bellii OSU 85-389  

Data for CP000849  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000849.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000849_1229 CDS_1267544-1266048 88.0 4.8e-25 1
CP000849_1121 CDS_1165668-1162918 74.8 2.7e-21 1
CP000849_0890 CDS_911274-912593 58.4 1.2e-16 1
CP000849_0980 CDS_1014956-1013124 50.8 1.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000849_1229 1/1 269 334 .. 1 87 [] 88.0 4.8e-25
CP000849_1121 1/1 694 762 .. 1 87 [] 74.8 2.7e-21
CP000849_0890 1/1 227 285 .. 1 87 [] 58.4 1.2e-16
CP000849_0980 1/1 378 448 .. 1 87 [] 50.8 1.7e-14

Alignments of top-scoring domains:
CP000849_1229: domain 1 of 1, from 269 to 334: score 88.0, E = 4.8e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+an+sHELRTPL+aI+g++e+L ++ +e+
CP000849_1 269 SNTKFFANISHELRTPLNAIIGFSEILMS---------EKDPEKS-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y++ i +++++ll++ind+Ldls++ a
CP000849_1 305 ----------RNYIKDINDAGKHLLSMINDILDLSKASAD 334

CP000849_1121: domain 1 of 1, from 694 to 762: score 74.8, E = 2.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k efl+n+ HE++TPLt+I+ + e+L +++ + s++qr
CP000849_1 694 LKHEFLRNINHEINTPLTGIISLGETLWANY-------DRFSDDQR- 732

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++e+i +++ rl++Li+++Ld+s++ +
CP000849_1 733 ----------RNAVEIIAKSSIRLNSLISNILDFSKLSSL 762

CP000849_0890: domain 1 of 1, from 227 to 285: score 58.4, E = 1.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la++sH+LRTPLt +++ +el+ e
CP000849_0 227 KRTTMLAMISHDLRTPLTRMKLQLELMDE------------------ 255

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++ +++++ ++++in Ld++r e+
CP000849_0 256 ----------NEETDGLKQDILTMQQMINSYLDFARGESA 285

CP000849_0980: domain 1 of 1, from 378 to 448: score 50.8, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a s+ + ++HE+++PLt I++++e Ll+ + s+e +
CP000849_0 378 AWSDVAKKVAHEIKNPLTPILLASERLLK----------KFSPEIK- 413

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e e++ yl+ i+r ++ + ++++++ ++r+ a+
CP000849_0 414 -----ERAEFENYLKMIIRHTNDIKNIVSEFVLFARLPAP 448


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 6 0|=
-13 47 1|*=======
-12 113 33|=====*=============
-11 173 174|============================*
-10 302 324|=================================================== *
-9 248 335|========================================== *
-8 219 250|===================================== *
-7 155 158|==========================*
-6 93 91|===============*
-5 50 49|========*
-4 26 26|====*
-3 14 14|==*
-2 8 7|=*
-1 6 3|*
0 5 2|*
1 1 1|*
2 2 0|=
3 2 0|=
> 4 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 214.7584
P(chi-square) = 2.528e-310

Total sequences searched: 1476

Whole sequence top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 4
Satisfying E cutoff: 4
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: