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106 projects found  

1 accessions found for Salinispora arenicola CNS-205  

Data for CP000850  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000850.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000850_3917 CDS_4622306-4620729 88.4 1.3e-24 1
CP000850_2201 CDS_2614810-2616243 87.4 2.5e-24 1
CP000850_4359 CDS_5113935-5110396 82.2 7.3e-23 1
CP000850_0219 CDS_251378-253030 76.6 2.8e-21 1
CP000850_1061 CDS_1227983-1226922 75.7 5.1e-21 1
CP000850_4796 CDS_5659444-5657990 75.4 5.9e-21 1
CP000850_0886 CDS_1017351-1019024 66.8 1.6e-18 1
CP000850_1422 CDS_1687782-1688951 61.5 5.3e-17 1
CP000850_1347 CDS_1598345-1596930 59.6 1.9e-16 1
CP000850_0396 CDS_464255-465532 59.0 2.6e-16 1
CP000850_4831 CDS_5693580-5695037 57.9 5.7e-16 1
CP000850_2664 CDS_3149360-3148008 55.0 3.7e-15 1
CP000850_1515 CDS_1789335-1790663 54.6 4.6e-15 1
CP000850_1645 CDS_1955352-1956776 48.2 3.1e-13 1
CP000850_2953 CDS_3480124-3481233 41.0 3.4e-11 1
CP000850_2805 CDS_3296450-3297823 34.0 3.2e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000850_3917 1/1 290 357 .. 1 87 [] 88.4 1.3e-24
CP000850_2201 1/1 253 320 .. 1 87 [] 87.4 2.5e-24
CP000850_4359 1/1 767 835 .. 1 87 [] 82.2 7.3e-23
CP000850_0219 1/1 255 322 .. 1 87 [] 76.6 2.8e-21
CP000850_1061 1/1 112 179 .. 1 87 [] 75.7 5.1e-21
CP000850_4796 1/1 249 315 .. 1 87 [] 75.4 5.9e-21
CP000850_0886 1/1 280 347 .. 1 87 [] 66.8 1.6e-18
CP000850_1422 1/1 157 224 .. 1 87 [] 61.5 5.3e-17
CP000850_1347 1/1 249 316 .. 1 87 [] 59.6 1.9e-16
CP000850_0396 1/1 168 245 .. 1 87 [] 59.0 2.6e-16
CP000850_4831 1/1 264 331 .. 1 87 [] 57.9 5.7e-16
CP000850_2664 1/1 233 300 .. 1 87 [] 55.0 3.7e-15
CP000850_1515 1/1 223 288 .. 1 87 [] 54.6 4.6e-15
CP000850_1645 1/1 237 302 .. 1 87 [] 48.2 3.1e-13
CP000850_2953 1/1 144 208 .. 1 87 [] 41.0 3.4e-11
CP000850_2805 1/1 246 313 .. 1 87 [] 34.0 3.2e-09

Alignments of top-scoring domains:
CP000850_3917: domain 1 of 1, from 290 to 357: score 88.4, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irg+ael + ++ ++s+eq+
CP000850_3 290 RMRQFVADASHELRTPLTTIRGFAELFRQGA--------ARSPEQT- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i++ea r+ L++dlL l+r++ +
CP000850_3 328 ----------GDLLRRIEDEAARMGLLVEDLLLLARLDRE 357

CP000850_2201: domain 1 of 1, from 253 to 320: score 87.4, E = 2.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+aIrgyae++++ g++ +++
CP000850_2 253 RVRQFVADASHELRTPLAAIRGYAEVARR-------GRDRVPPDV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l+++++e+ r+ L++dlL l+r+++g
CP000850_2 291 ----------AHALRRVESESTRMTGLVEDLLLLARLDSG 320

CP000850_4359: domain 1 of 1, from 767 to 835: score 82.2, E = 7.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++++a lL e +++ls++q+
CP000850_4 767 YKSEFLANMSHELRTPLNSLLLLARLLVE------NPEQNLSPKQI- 806

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ +ti++++ ll+Li+d+Ldls+ieag
CP000850_4 807 -----------EFARTIHSAGTDLLSLIDDILDLSKIEAG 835

CP000850_0219: domain 1 of 1, from 255 to 322: score 76.6, E = 2.8e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+Irg+ael ++++ ++ +++
CP000850_0 255 RLRDFVADASHELRTPLTSIRGFAELYRRGG-------APPGPDL-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e +i+ ea r+ L++dlL l+++++
CP000850_0 293 ----------DETMTRIEAEAARMGLLVEDLLLLAQLDHD 322

CP000850_1061: domain 1 of 1, from 112 to 179: score 75.7, E = 5.1e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a +sH+LRTPL+++r++ae+L++++ + ++
CP000850_1 112 GRRDLVAWVSHDLRTPLAGLRAMAEALEDRV-------VDDPATV-- 149

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
ey ++i+ e++r+ rL++dl +lsri ag
CP000850_1 150 ----------GEYHRRIRVETDRMTRLVDDLFELSRINAG 179

CP000850_4796: domain 1 of 1, from 249 to 315: score 75.4, E = 5.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++efl ++sHELRTPLtaIrgy e+L + + ++ ++
CP000850_4 249 RQREFLLSVSHELRTPLTAIRGYGEALAD---------GVIDPAEV- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+til eae+l+rL++dlL l+r+ea
CP000850_4 286 ----------TGTGRTILAEAEHLDRLVRDLLALARLEAA 315

CP000850_0886: domain 1 of 1, from 280 to 347: score 66.8, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt++r++a+l+ + +++e ++
CP000850_0 280 LQRRFTSDVSHELRTPLTTVRMAADLIFA-------ERDEFDPAV-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e ++ e++r ++L+ dlL++sr +ag
CP000850_0 318 ----------ARSAELLQTELDRFEELLTDLLEISRFDAG 347

CP000850_1422: domain 1 of 1, from 157 to 224: score 61.5, E = 5.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ +f+an+sHELRTPL+++r+ +++ l d+e++ +
CP000850_1 157 AQKRFVANASHELRTPLAVMRTEIDVTLS--------DDEADTAE-- 193

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr++ ++++++er + L++ lL l+r ea+
CP000850_1 194 ---------YRRMSTIVRDASERANGLVDALLVLARSEAQ 224

CP000850_1347: domain 1 of 1, from 249 to 316: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a++sHELRTPL+a+ g a+l l+++ t+++ +
CP000850_1 249 LTRTFVADASHELRTPLSAVHGWADLYLNDGI------TDWDGVD-- 287

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++i+ e+ r+ +L+++lL+l+r++a
CP000850_1 288 -----------EAMRRIRTETTRMGALVEQLLTLARLDAH 316

CP000850_0396: domain 1 of 1, from 168 to 245: score 59.0, E = 2.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvl.....agdtels
+++f+an+sHEL+TP+ a++++ae+Ll+ ++++ +a++++ls
CP000850_0 168 VRRDFVANVSHELKTPIGALQLLAEALLD-----AtepagAERPDLS 209

eeqrlpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ ++ r++ e+i++e+ rl rL+++lL+l+r++
CP000850_0 210 EDLVA---------ARRFAERIRHESTRLGRLVQELLELTRLQGA 245

CP000850_4831: domain 1 of 1, from 264 to 331: score 57.9, E = 5.7e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a sHELRTP+t+I+gya++L + +++ l++ +r
CP000850_4 264 ERDLFVAVTSHELRTPVTVIKGYADTLTA-------HWDSLNDLDR- 302

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + ++i + a+ l rL+++ L s +eag
CP000850_4 303 ----------RMAAQKIGQRANELARLVDR-LLSSTAEAG 331

CP000850_2664: domain 1 of 1, from 233 to 300: score 55.0, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELR PL +++++a++L ++++ +e +
CP000850_2 233 RDRRFAADVSHELRSPLQTLSAAASVLTS-------RRGHHDERT-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +e+ r ++L+ndlL+l+r +++
CP000850_2 271 ----------ATAAGLVAEEIGRFQQLVNDLLELARTDQP 300

CP000850_1515: domain 1 of 1, from 223 to 288: score 54.6, E = 4.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f+a+++HELR PLt +r+ +e++++ la +t++s+
CP000850_1 223 RERAFVADAAHELRSPLTNLRTELEVAQR-----LADRTDWSAVS-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l ++erl rL++dlL l+r+++
CP000850_1 263 --------------TDLLADTERLGRLVDDLLLLARLDED 288

CP000850_1645: domain 1 of 1, from 237 to 302: score 48.2, E = 3.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+a++sH+LR+PLta+r+ +e L l+++q
CP000850_1 237 RQRAFVAHASHQLRNPLTALRLRVEELGP----------SLGDPQG- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +l+e++rl ++ lL+l+r+e
CP000850_1 273 ----------QAEHRLALEETDRLALVLDGLLTLARAERT 302

CP000850_2953: domain 1 of 1, from 144 to 208: score 41.0, E = 3.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la+l HELRTPL++I +y+e++++++ + ++e++
CP000850_2 144 TRRRLLADLGHELRTPLATIEAYLEAAEDGV--------AVDDEDL- 181

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ ++ rl rL +d+ sr+e+
CP000850_2 182 -------------QSVLRAQTARLHRLADDIAAVSRAETH 208

CP000850_2805: domain 1 of 1, from 246 to 313: score 34.0, E = 3.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ + HELRTPLt++r+++ lL + +el+ r
CP000850_2 246 AQQRLVQEAGHELRTPLTSMRTNIALLHR--------FDELPLSAR- 283

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l + e++ l +Lin+l +l+ +
CP000850_2 284 ----------GPLLTDLTMESRELIKLINELVELATDTRE 313


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 11 0|=
-13 49 3|*===
-12 200 112|======*======
-11 482 582|=============================== *
-10 900 1081|========================================================= *
-9 903 1116|========================================================= *
-8 891 836|====================================================*===
-7 577 526|================================*====
-6 376 303|==================*=====
-5 236 166|==========*====
-4 119 89|=====*==
-3 66 47|==*==
-2 42 24|=*=
-1 24 12|*=
0 4 6|*
1 6 3|*
2 5 1|*
3 5 0|=
4 2 0|=
5 0 0|
6 0 0|
> 7 19 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 251.5506
P(chi-square) = 0

Total sequences searched: 4917

Whole sequence top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 16
Satisfying E cutoff: 16
Total memory: 27K


Acknowledgements:

This research is funded by:

Developed by: