Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
7 projects found  

3 accessions found for Deinococcus geothermalis DSM 11300  

Data for CP000856  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000856.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000856_0101 CDS_97955-96711 44.8 1.2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000856_0101 1/1 208 271 .. 1 87 [] 44.8 1.2e-13

Alignments of top-scoring domains:
CP000856_0101: domain 1 of 1, from 208 to 271: score 44.8, E = 1.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ef++++sHELRTPL+a+++ +++ ++ + ++
CP000856_0 208 REAEFTRHASHELRTPLAAMKAQLDANRA---------GWVTD---- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l t++ ++er+ rL lL l+r +
CP000856_0 242 ----------AEALATARVQVERMTRLTGALLLLAREDRV 271


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 3 0|===
-12 13 4|===*=========
-11 20 24|==================== *
-10 32 45|================================ *
-9 40 46|======================================== *
-8 38 34|=================================*====
-7 22 21|====================*=
-6 14 12|===========*==
-5 6 6|=====*
-4 5 3|==*==
-3 7 1|*======
-2 2 1|*=
> -1 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 6.0361
P(chi-square) = 0.4192

Total sequences searched: 205

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: