Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594  

Data for CP000857  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000857.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000857_2911 CDS_3045785-3048541 100.2 5.5e-28 1
CP000857_0397 CDS_446147-447442 90.2 3.7e-25 1
CP000857_2259 CDS_2386539-2389301 82.3 6.2e-23 1
CP000857_1406 CDS_1506740-1509586 81.3 1.2e-22 1
CP000857_3288 CDS_3425913-3423547 77.6 1.4e-21 1
CP000857_3787 CDS_3962261-3964948 72.8 3e-20 1
CP000857_1057 CDS_1127729-1129165 69.6 2.5e-19 1
CP000857_4034 CDS_4242122-4240749 67.0 1.3e-18 1
CP000857_1542 CDS_1657605-1656202 63.5 1.3e-17 1
CP000857_3876 CDS_4068462-4069859 61.9 3.8e-17 1
CP000857_0693 CDS_760361-757749 61.1 6.6e-17 1
CP000857_3979 CDS_4188605-4187556 60.3 1.1e-16 1
CP000857_4570 CDS_4820582-4821994 59.8 1.4e-16 1
CP000857_2561 CDS_2691639-2692988 57.5 6.8e-16 1
CP000857_3141 CDS_3280433-3281782 55.9 1.9e-15 1
CP000857_3458 CDS_3591600-3590257 54.9 3.7e-15 1
CP000857_4219 CDS_4463626-4462547 47.7 4.1e-13 1
CP000857_2183 CDS_2318022-2319323 47.4 4.8e-13 1
CP000857_2727 CDS_2868989-2867574 36.6 5.5e-10 1
CP000857_1230 CDS_1330066-1332072 35.3 1.3e-09 1
CP000857_2265 CDS_2394787-2393009 31.5 1.5e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000857_2911 1/1 292 357 .. 1 87 [] 100.2 5.5e-28
CP000857_0397 1/1 203 269 .. 1 87 [] 90.2 3.7e-25
CP000857_2259 1/1 395 460 .. 1 87 [] 82.3 6.2e-23
CP000857_1406 1/1 469 534 .. 1 87 [] 81.3 1.2e-22
CP000857_3288 1/1 292 357 .. 1 87 [] 77.6 1.4e-21
CP000857_3787 1/1 428 493 .. 1 87 [] 72.8 3e-20
CP000857_1057 1/1 251 319 .. 1 87 [] 69.6 2.5e-19
CP000857_4034 1/1 238 300 .. 1 87 [] 67.0 1.3e-18
CP000857_1542 1/1 240 304 .. 1 87 [] 63.5 1.3e-17
CP000857_3876 1/1 246 312 .. 1 87 [] 61.9 3.8e-17
CP000857_0693 1/1 639 706 .. 1 87 [] 61.1 6.6e-17
CP000857_3979 1/1 129 186 .. 1 79 [. 60.3 1.1e-16
CP000857_4570 1/1 251 316 .. 1 87 [] 59.8 1.4e-16
CP000857_2561 1/1 231 297 .. 1 87 [] 57.5 6.8e-16
CP000857_3141 1/1 236 302 .. 1 87 [] 55.9 1.9e-15
CP000857_3458 1/1 230 290 .. 1 87 [] 54.9 3.7e-15
CP000857_4219 1/1 145 205 .. 1 87 [] 47.7 4.1e-13
CP000857_2183 1/1 211 271 .. 1 87 [] 47.4 4.8e-13
CP000857_2727 1/1 246 311 .. 1 87 [] 36.6 5.5e-10
CP000857_1230 1/1 447 515 .. 1 87 [] 35.3 1.3e-09
CP000857_2265 1/1 357 426 .. 1 87 [] 31.5 1.5e-08

Alignments of top-scoring domains:
CP000857_2911: domain 1 of 1, from 292 to 357: score 100.2, E = 5.5e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000857_2 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000857_2 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000857_0397: domain 1 of 1, from 203 to 269: score 90.2, E = 3.7e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP000857_0 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP000857_0 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

CP000857_2259: domain 1 of 1, from 395 to 460: score 82.3, E = 6.2e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
CP000857_2 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
CP000857_2 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

CP000857_1406: domain 1 of 1, from 469 to 534: score 81.3, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000857_1 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + +++ ll++i+d+Ld+s+ie++
CP000857_1 505 ----------ERLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000857_3288: domain 1 of 1, from 292 to 357: score 77.6, E = 1.4e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP000857_3 292 DKTTFISTISHELRTPLNGIVGLSRILLD---------TNLTAEQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000857_3 328 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 357

CP000857_3787: domain 1 of 1, from 428 to 493: score 72.8, E = 3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
CP000857_3 428 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
CP000857_3 464 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 493

CP000857_1057: domain 1 of 1, from 251 to 319: score 69.6, E = 2.5e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000857_1 251 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 289

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++++++ l++Li++lLd+ r
CP000857_1 290 ----------KEVVDILDDSSRNLQKLIEQLLDYNRKLVD 319

CP000857_4034: domain 1 of 1, from 238 to 300: score 67.0, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000857_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000857_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000857_1542: domain 1 of 1, from 240 to 304: score 63.5, E = 1.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP000857_1 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000857_1 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

CP000857_3876: domain 1 of 1, from 246 to 312: score 61.9, E = 3.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP000857_3 246 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP000857_3 283 ----------HELAQVMTKEADRLNRVVSELLELVKPAHL 312

CP000857_0693: domain 1 of 1, from 639 to 706: score 61.1, E = 6.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP000857_0 639 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 676

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000857_0 677 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 706

CP000857_3979: domain 1 of 1, from 129 to 186: score 60.3, E = 1.1e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000857_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000857_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP000857_4570: domain 1 of 1, from 251 to 316: score 59.8, E = 1.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +l HEL+ PL+aIrg+ae+L+e ++ +
CP000857_4 251 EIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
CP000857_4 287 ----------TRFTENILAQNTRMQALVETLLRQARLENR 316

CP000857_2561: domain 1 of 1, from 231 to 297: score 57.5, E = 6.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
CP000857_2 231 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 266

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
CP000857_2 267 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 297

CP000857_3141: domain 1 of 1, from 236 to 302: score 55.9, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP000857_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP000857_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP000857_3458: domain 1 of 1, from 230 to 290: score 54.9, E = 3.7e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP000857_3 230 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000857_3 261 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 290

CP000857_4219: domain 1 of 1, from 145 to 205: score 47.7, E = 4.1e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000857_4 145 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP000857_4 176 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 205

CP000857_2183: domain 1 of 1, from 211 to 271: score 47.4, E = 4.8e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP000857_2 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000857_2 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP000857_2727: domain 1 of 1, from 246 to 311: score 36.6, E = 5.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP000857_2 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
CP000857_2 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

CP000857_1230: domain 1 of 1, from 447 to 515: score 35.3, E = 1.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
CP000857_1 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
CP000857_1 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

CP000857_2265: domain 1 of 1, from 357 to 426: score 31.5, E = 1.5e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
CP000857_2 357 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 396

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
CP000857_2 397 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 426


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-16 1 0|=
-15 11 0|=
-14 45 0|===
-13 115 3|*=======
-12 275 104|======*============
-11 524 542|=================================== *
-10 747 1006|================================================== *
-9 850 1039|========================================================= *
-8 752 778|===================================================*
-7 496 490|================================*=
-6 301 282|==================*==
-5 220 154|==========*====
-4 97 82|=====*=
-3 37 43|==*
-2 31 22|=*=
-1 25 12|*=
0 16 6|*=
1 5 3|*
2 6 1|*
3 1 0|=
4 0 0|
> 5 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 444.6647
P(chi-square) = 0

Total sequences searched: 4578

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: