Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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2 accessions found for   

Data for CP000857  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000857.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000857_1906 CDS_2014772-2012931 74.3 1.5e-21 1
CP000857_1150 CDS_1249194-1247494 72.9 3.7e-21 1
CP000857_3747 CDS_3925012-3923510 65.1 7.8e-19 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000857_1906 1/1 405 473 .. 1 70 [] 74.3 1.5e-21
CP000857_1150 1/1 361 428 .. 1 70 [] 72.9 3.7e-21
CP000857_3747 1/1 304 370 .. 1 70 [] 65.1 7.8e-19

Alignments of top-scoring domains:
CP000857_1906: domain 1 of 1, from 405 to 473: score 74.3, E = 1.5e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++QsLs +k+q++ ++++ d pe re l +i
CP000857_1 405 ERATIARELHDSIAQSLSCMKMQVSCLQMQG--DVLPESSRELLSQI 449

relarealaevRrllgdLR.paal<-*
r ++ + a++R+ll+++R ++
CP000857_1 450 RNELNCSWAQLRELLTTFRlQLTE 473

CP000857_1150: domain 1 of 1, from 361 to 428: score 72.9, E = 3.7e-21
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa IARELHDs++Q Ls +++ql l++r++ ++d++ a+ ++
CP000857_1 361 ERATIARELHDSLAQVLSYLRIQLTLLKRAI--PEDNAGAQSIMADF 405

relarealaevRrllgdLRpaal<-*
+++++a++++R+ll+++R +
CP000857_1 406 SRALNDAYRQLRELLTTFRLTLQ 428

CP000857_3747: domain 1 of 1, from 304 to 370: score 65.1, E = 7.8e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
R+ ARELHD +gQ+++ai+ q++ ++rl+ +d++ +++ + i
CP000857_3 304 VRRDVARELHDDIGQTITAIRTQAGIVQRLA---ADNGGVKQSGQLI 347

relarealaevRrllgdLRpaal<-*
++l+ ++ vRrllg+LRp +l
CP000857_3 348 EQLSLGVYDAVRRLLGRLRPRQL 370


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-16 2 0|=
-15 4 0|=
-14 78 0|======
-13 168 0|============
-12 212 51|===*============
-11 314 419|======================= *
-10 782 973|======================================================== *
-9 803 1105|==========================================================*
-8 623 852|============================================= *
-7 524 535|======================================*
-6 420 303|=====================*========
-5 292 162|===========*=========
-4 142 84|=====*=====
-3 83 43|===*==
-2 57 22|=*===
-1 29 11|*==
0 19 5|*=
1 10 2|*
2 4 1|*
3 4 0|=
4 1 0|=
5 3 0|=
> 6 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1048.4539
P(chi-square) = 0

Total sequences searched: 4578

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: