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1 accessions found for Nitrosopumilus maritimus SCM1  

Data for CP000866  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000866.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000866_0916 CDS_806068-804551 57.8 2.2e-16 1
CP000866_0456 CDS_412369-414171 54.9 1.5e-15 1
CP000866_0652 CDS_595230-596483 51.3 1.5e-14 1
CP000866_0368 CDS_340590-339073 51.1 1.7e-14 1
CP000866_1203 CDS_1107169-1105436 51.0 1.8e-14 1
CP000866_1436 CDS_1311712-1310429 50.5 2.5e-14 1
CP000866_0245 CDS_221920-220541 49.4 5.2e-14 1
CP000866_0185 CDS_171179-172975 48.9 7.1e-14 1
CP000866_1243 CDS_1144197-1145837 41.6 8.5e-12 1
CP000866_1295 CDS_1190740-1188884 40.1 2.2e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000866_0916 1/1 281 349 .. 1 87 [] 57.8 2.2e-16
CP000866_0456 1/1 393 460 .. 1 87 [] 54.9 1.5e-15
CP000866_0652 1/1 209 277 .. 1 87 [] 51.3 1.5e-14
CP000866_0368 1/1 296 362 .. 1 87 [] 51.1 1.7e-14
CP000866_1203 1/1 365 433 .. 1 87 [] 51.0 1.8e-14
CP000866_1436 1/1 221 286 .. 1 87 [] 50.5 2.5e-14
CP000866_0245 1/1 245 312 .. 1 87 [] 49.4 5.2e-14
CP000866_0185 1/1 379 449 .. 1 87 [] 48.9 7.1e-14
CP000866_1243 1/1 334 401 .. 1 87 [] 41.6 8.5e-12
CP000866_1295 1/1 411 474 .. 1 87 [] 40.1 2.2e-11

Alignments of top-scoring domains:
CP000866_0916: domain 1 of 1, from 281 to 349: score 57.8, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e+++++sHE+++PLt I+++++lLl+ ++++l+ +q
CP000866_0 281 QKDELVSMVSHEIKNPLTPIILACQLLLT------EKEGPLTQKQ-- 319

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ il +++ +L++dl d+ ++ +
CP000866_0 320 ----------KHRIKQILVNSNQVTALLSDLSDIKTLDRN 349

CP000866_0456: domain 1 of 1, from 393 to 460: score 54.9, E = 1.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e++ l+H+LR+PL++I+g++ l++++l +e++e
CP000866_0 393 NIGELATRLAHDLRNPLAVIQGAVNLMKTDL-------QEKDESL-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ i+ ++ r+ ++ind++d+ r +
CP000866_0 431 ----------DKRFRMIDAAILRMTHQINDVMDFVRVSNL 460

CP000866_0652: domain 1 of 1, from 209 to 277: score 51.3, E = 1.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e+++ +sH++R+PLt+I+g ++lL +++t +e+++
CP000866_0 209 SIGELASRVSHDIRNPLTTIKGVVDLLTS------QKSTVTDEKDI- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le i++++ +++++++d+Ld+ r
CP000866_0 249 -----------QRLELIKKSVTQINHQVEDVLDYVRTNKI 277

CP000866_0368: domain 1 of 1, from 296 to 362: score 51.1, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++ l+H++R+PL++I++++++L ++ ++ se+
CP000866_0 296 TIGHLASRLAHDIRNPLSVIQMTTDILSNN--------PDISEKF-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +i ++++r+++++n++Ld+ +
CP000866_0 333 ----------QKYAGSITESIQRISHQVNNVLDYVQQKPL 362

CP000866_1203: domain 1 of 1, from 365 to 433: score 51.0, E = 1.8e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ an++H+L++PL++I+ ++ +++ ++ +++++ +
CP000866_1 365 AMGELSANVAHDLKNPLASIKSATNIIKQNS-------NNMDPKLK- 403

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +++r++ r+ ++i+++L + ri
CP000866_1 404 ----------ELVFPKMDRAISRITHQIDEVLNYVRITPI 433

CP000866_1436: domain 1 of 1, from 221 to 286: score 50.5, E = 2.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a lsH+LR+PL+ I + ++l+ + +++ e++
CP000866_1 221 VLGELTARLSHDLRNPLSIIAAGVSLISK---------QTQEEKT-- 256

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++r+ ++i+d++++ + ++
CP000866_1 257 ----------AQTCEKIDHSVKRMTHQIDDVMTFVKKREK 286

CP000866_0245: domain 1 of 1, from 245 to 312: score 49.4, E = 5.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a + H+LR+PLt+I+ ++ ++++ +++e++
CP000866_0 245 TIGEMSARITHDLRNPLTTIKNAVAVMKM-----------KNPEKIK 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++ i++ + r++++i+++L + ++ ++
CP000866_0 281 EN--------QQYFDMIQDGVTRMNHQIDEVLAFVKAKEP 312

CP000866_0185: domain 1 of 1, from 379 to 449: score 48.9, E = 7.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+ l+H+LR+PL+ +++ +elL++ +++d + s+ ++
CP000866_0 379 AIGELSGRLAHDLRNPLSIMKLSVELLKK-----QPSDRTFSDADV- 419

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+ i++++ r++++++d+L + r
CP000866_0 420 ----------QKRLDLIDKSITRISHQVDDVLGYVRNSPL 449

CP000866_1243: domain 1 of 1, from 334 to 401: score 41.6, E = 8.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++n++H++R+PL +Ir + +++ ++ + ++
CP000866_1 334 VIGQLASNIAHDIRNPLGTIRSSVTRIEK---------QNETINET- 370

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +e+i+r++ r++++++ +L + r
CP000866_1 371 ---------INQETERIKRSVARMNHQVESVLNYVRTTPL 401

CP000866_1295: domain 1 of 1, from 411 to 474: score 40.1, E = 2.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +e+ a +sH++R+PL+ I+ elL+ +e +
CP000866_1 411 AIGELSARISHDIRNPLAIIKSEFELLKL--------QKQIDEND-- 447

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++i+ +++r+ ++++d+L++ r
CP000866_1 448 -------------FRRIDTSINRITHQLDDVLEYLRDTPL 474


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 8 0|==
-13 38 1|*=====
-12 128 41|=====*=============
-11 242 212|==============================*====
-10 361 394|==================================================== *
-9 345 407|================================================== *
-8 258 305|===================================== *
-7 148 192|====================== *
-6 106 110|===============*
-5 65 60|========*=
-4 40 32|====*=
-3 15 17|==*
-2 16 9|=*=
-1 8 4|*=
0 1 2|*
1 2 1|*
> 2 14 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 226.3608
P(chi-square) = 9.416e-313

Total sequences searched: 1795

Whole sequence top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 10
Satisfying E cutoff: 10
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: