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1 accessions found for Methanococcus maripaludis C6  

Data for CP000867  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000867.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000867_1358 CDS_1271791-1273710 82.1 2.9e-23 1
CP000867_1533 CDS_1448202-1446361 79.9 1.2e-22 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000867_1358 1/1 412 480 .. 1 87 [] 82.1 2.9e-23
CP000867_1533 1/1 390 458 .. 1 87 [] 79.9 1.2e-22

Alignments of top-scoring domains:
CP000867_1358: domain 1 of 1, from 412 to 480: score 82.1, E = 2.9e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse++a +sHELRTPLt+I+gy+el l++ ++ ++ q
CP000867_1 412 LKSELIAIVSHELRTPLTSIKGYVELVLDGTM------GAINDSQ-- 450

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l+++++ + rl+rLi+ +Ldls+ie g
CP000867_1 451 ----------KKCLQVADDNIVRLRRLIESMLDLSKIERG 480

CP000867_1533: domain 1 of 1, from 390 to 458: score 79.9, E = 1.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kse+++ +sHELRTPLt+Irgy++lL++e ++l+e+q
CP000867_1 390 LKSELISIVSHELRTPLTSIRGYIDLLKDETA------GKLNEKQ-- 428

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++++i + +erl r+ +++ dl +++
CP000867_1 429 ----------KEFVSVISENSERLKRITDNMSDLVTVDNE 458


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 12 0|==
-13 39 1|*=====
-12 119 41|=====*===========
-11 219 216|==============================*=
-10 375 401|====================================================== *
-9 332 414|================================================ *
-8 280 310|======================================== *
-7 172 195|========================= *
-6 113 112|===============*=
-5 69 61|========*=
-4 37 33|====*=
-3 24 17|==*=
-2 17 9|=*=
-1 8 4|*=
0 4 2|*
1 0 1|*
2 2 0|=
3 0 0|
4 1 0|=
5 0 0|
> 6 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 177.6389
P(chi-square) = 7.241e-33

Total sequences searched: 1826

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: