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Classification of phyla is from NCBI page
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4 accessions found for Burkholderia multivorans ATCC 17616  

Data for CP000869  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000869.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000869_2045 CDS_2370530-2367525 88.4 5.4e-25 1
CP000869_2048 CDS_2375009-2371920 80.3 1.1e-22 1
CP000869_1085 CDS_1280198-1278234 68.5 2.4e-19 1
CP000869_1155 CDS_1362623-1364080 67.2 5.7e-19 1
CP000869_1181 CDS_1392435-1391005 61.2 2.8e-17 1
CP000869_0521 CDS_624314-625444 60.1 5.7e-17 1
CP000869_1532 CDS_1806858-1810502 58.0 2.2e-16 1
CP000869_0036 CDS_58436-54294 55.5 1.2e-15 1
CP000869_0533 CDS_642355-640985 54.5 2.2e-15 1
CP000869_2051 CDS_2377073-2378878 51.4 1.7e-14 1
CP000869_1531 CDS_1806283-1804703 51.2 2e-14 1
CP000869_1193 CDS_1406760-1407845 45.4 8.5e-13 1
CP000869_0560 CDS_679623-677632 42.4 5.8e-12 1
CP000869_1723 CDS_2013069-2013845 41.2 1.3e-11 1
CP000869_0525 CDS_628772-630829 35.5 5.3e-10 1
CP000869_1927 CDS_2234422-2235831 30.8 1.2e-08 1
CP000869_0232 CDS_281509-279626 30.0 1.9e-08 1
CP000869_0010 CDS_12672-10396 27.3 1.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000869_2045 1/1 519 584 .. 1 87 [] 88.4 5.4e-25
CP000869_2048 1/1 518 583 .. 1 87 [] 80.3 1.1e-22
CP000869_1085 1/1 277 342 .. 1 87 [] 68.5 2.4e-19
CP000869_1155 1/1 234 301 .. 1 87 [] 67.2 5.7e-19
CP000869_1181 1/1 247 312 .. 1 87 [] 61.2 2.8e-17
CP000869_0521 1/1 161 226 .. 1 87 [] 60.1 5.7e-17
CP000869_1532 1/1 842 913 .. 1 87 [] 58.0 2.2e-16
CP000869_0036 1/1 1019 1087 .. 1 87 [] 55.5 1.2e-15
CP000869_0533 1/1 233 298 .. 1 87 [] 54.5 2.2e-15
CP000869_2051 1/1 235 300 .. 1 87 [] 51.4 1.7e-14
CP000869_1531 1/1 163 229 .. 1 87 [] 51.2 2e-14
CP000869_1193 1/1 134 198 .. 1 87 [] 45.4 8.5e-13
CP000869_0560 1/1 299 364 .. 1 87 [] 42.4 5.8e-12
CP000869_1723 1/1 27 94 .. 1 87 [] 41.2 1.3e-11
CP000869_0525 1/1 449 521 .. 1 87 [] 35.5 5.3e-10
CP000869_1927 1/1 241 298 .. 1 79 [. 30.8 1.2e-08
CP000869_0232 1/1 398 466 .. 1 87 [] 30.0 1.9e-08
CP000869_0010 1/1 387 451 .. 1 87 [] 27.3 1.2e-07

Alignments of top-scoring domains:
CP000869_2045: domain 1 of 1, from 519 to 584: score 88.4, E = 5.4e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL+aI g++el+ + ++l + +
CP000869_2 519 AKSTFLATMSHEIRTPLNAIVGNLELMAR---------APLAPTE-- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti ++++ llr+i+d+Ldls++e++
CP000869_2 555 ----------RRRLDTIASSSDALLRIIDDVLDLSKAESN 584

CP000869_2048: domain 1 of 1, from 518 to 583: score 80.3, E = 1.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL++I+g++elL++ ++l+ +q
CP000869_2 518 AKSSFLAAMSHEIRTPLNVILGNLELLER---------STLDLPQ-- 553

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++t++++a ll+L++ +Ld+++ eag
CP000869_2 554 ----------RSRVQTLRNAASGLLELVSGILDFTKVEAG 583

CP000869_1085: domain 1 of 1, from 277 to 342: score 68.5, E = 2.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L+ +
CP000869_1 277 LKDELLATVSHELRTPLNVIYGWVEVLRS---------VDGQGFA-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ i+r+a++l r++ dlLd s + +g
CP000869_1 313 ----------QQAVDAIDRSARSLARMVGDLLDASSLATG 342

CP000869_1155: domain 1 of 1, from 234 to 301: score 67.2, E = 5.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELRTP++ ++g ++++l+ + ++s++ +
CP000869_1 234 RLEAFNADVAHELRTPVSILIGQTQVALT--------SRDRSADRL- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++ l+e erl+ +ind+L lsr + g
CP000869_1 272 ----------RQTLQSNLEEFERLRVIINDMLFLSRSDRG 301

CP000869_1181: domain 1 of 1, from 247 to 312: score 61.2, E = 2.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H+L+TPL+a+++ +el+l+ ++ +
CP000869_1 247 ARRRFFADAAHQLKTPLAAVQAGVELALR---------PDEQPRV-- 282

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+++ ++++ +++++lL lsr+++
CP000869_1 283 ----------NVHLRRVNGAVRQAAKIVQQLLSLSRLDSD 312

CP000869_0521: domain 1 of 1, from 161 to 226: score 60.1, E = 5.7e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ ++sHELRTPL+ +r+++e+L+e + se +
CP000869_0 161 AQRDLTNGISHELRTPLARVRFALEMLRE----------PGSEAE-- 195

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +l++i +++ l++Li+ L+++r+e
CP000869_0 196 ---------YRSALDSIAQDVTELDELIDMSLTYARLEYS 226

CP000869_1532: domain 1 of 1, from 842 to 913: score 58.0, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fla +sHELR PL++I+ a +L + + +++ ++eq+
CP000869_1 842 AKDNFLALVSHELRAPLNVISSWAAVLMT-----ASERGMPTDEQMS 883

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ tilr + +Li+dlLd sri +g
CP000869_1 884 ----------QRAVTTILRHCQLQAELIDDLLDVSRISSG 913

CP000869_0036: domain 1 of 1, from 1019 to 1087: score 55.5, E = 1.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ef+a lsHELR PL+ I ae+L + l++ + ++
CP000869_0 1019 LKDEFIAVLSHELRHPLNLIGVRAEMLPR-----LPETRDIPAVR-- 1058

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ e i+++++ ++i+dlLdlsri++g
CP000869_0 1059 -----------EAAELIRQAVRAQAQIIDDLLDLSRIRTG 1087

CP000869_0533: domain 1 of 1, from 233 to 298: score 54.5, E = 2.2e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+a+++HELRTP+ +++ ++lL++ ++++++r
CP000869_0 233 LQRHFIADAAHELRTPIMGLSIQSQLLRR----------AATADER- 268

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ + rl +L ++lL+l+r e
CP000869_0 269 ----------ERILAQIHAGTTRLGHLAEQLLTLARVEPD 298

CP000869_2051: domain 1 of 1, from 235 to 300: score 51.4, E = 1.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ fl ++sHELRTPL aI g +e+Ll+ ++s+
CP000869_2 235 AKNAFLGMVSHELRTPLQAICGSIEILLA---------RPQSDAN-- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++++++a +l++L+ dl d+ ++++
CP000869_2 271 ----------LKTIRRLQNSAASLEALVKDLTDYIKLRST 300

CP000869_1531: domain 1 of 1, from 163 to 229: score 51.2, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ f+a++sHELR P taI+g a++L + ++ ++ +
CP000869_1 163 SKDAFIAAVSHELRAPSTAILGWADMLGD---------AADDAAVV- 199

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re + +i+r + l rL++dlLd sr+++g
CP000869_1 200 ----------REGVAVIRRNILALTRLVDDLLDASRLGQG 229

CP000869_1193: domain 1 of 1, from 134 to 198: score 45.4, E = 8.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+++HELRTP+t++rg ++ L e + ++ +
CP000869_1 134 EQAFWNAAIAHELRTPVTVLRGRLQGLAE---------GVFTPSE-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++l ++e l+rLi+dl+ s +++g
CP000869_1 170 -----------SLYRSLLAQVEGLSRLIEDLRVVSLADSG 198

CP000869_0560: domain 1 of 1, from 299 to 364: score 42.4, E = 5.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks++la++sH+LR+P +a+ ++ +L+ +++++
CP000869_0 299 AKSRLLAAASHDLRQPSHALGVLVGALRG---------VPMPDDG-- 334

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ i+ +++ l+ L lLd sr++ag
CP000869_0 335 ----------QRLLQQIELSTRALDTLFGALLDVSRLDAG 364

CP000869_1723: domain 1 of 1, from 27 to 94: score 41.2, E = 1.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LR PL+a+ +L+++l +++++
CP000869_1 27 LRDQALSTASHDLRSPLNAMHSWGYVLERQL-------ANADPNL-- 64

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l i+ +e+ +Li+d+Ld r+e+
CP000869_1 65 ----------QRALAGIRTGIEQQVKLIDDVLDAPRAETR 94

CP000869_0525: domain 1 of 1, from 449 to 521: score 35.5, E = 5.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++l+HEL++PL+a y+ ++l+ + gd++l++ +
CP000869_0 449 TMGEMASALAHELNQPLAAANSYCTAALN----LMTGDAPLDDAGGP 491

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l + ++++er ++i+++ ++ r ++
CP000869_0 492 ----------RELLAKGRHQVERAGQIIRRVQQFVRKTTP 521

CP000869_1927: domain 1 of 1, from 241 to 298: score 30.8, E = 1.2e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++H++RTPL+ + + +elL ++ ++ +
CP000869_1 241 AMQRFIADAAHQMRTPLARLDAQIELLDG---------DDDPARH-- 276

peLRledpeyreyletilreaerllrLindlL<-*
+ l+ ++ rL +lL
CP000869_1 277 ----------AARLDALRATCADVGRLTGQLL 298

CP000869_0232: domain 1 of 1, from 398 to 466: score 30.0, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a+l HEL++PL aIr++++ ++++++ +++++
CP000869_0 398 VLGQMAAGLTHELNQPLVAIRTLCDNARTFFE------RDQPAQA-- 436

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i + ++ + L +l +++r
CP000869_0 437 ----------FANLERIGKLVDGMAVLTGELKTFARKPDV 466

CP000869_0010: domain 1 of 1, from 387 to 451: score 27.3, E = 1.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ L I+ +++++++ +++e++
CP000869_0 387 ALGNLVGSVAHDFNNLLMIISSNVQIMRR-----------RNAEHL- 421

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+r+++ ++L ++lL +r +
CP000869_0 422 ----------DKELGAIERALKNGQSLTRQLLGVARKQPL 451


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 4 0|=
-13 15 1|*=
-12 58 49|======*=
-11 190 255|======================== *
-10 348 473|============================================ *
-9 440 488|======================================================= *
-8 405 365|=============================================*=====
-7 294 230|============================*========
-6 172 132|================*=====
-5 99 72|========*====
-4 41 38|====*=
-3 33 20|==*==
-2 13 10|=*
-1 6 5|*
0 4 2|*
1 2 1|*
2 3 0|=
> 3 25 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 106.9379
P(chi-square) = 7.477e-18

Total sequences searched: 2152

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: