Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
76 projects found  

4 accessions found for Burkholderia multivorans ATCC 17616  

Data for CP000869  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000869.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000869_1095 CDS_1292047-1294158 65.5 2.8e-19 1
CP000869_0030 CDS_46276-44897 57.8 5.1e-17 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000869_1095 1/1 490 562 .. 1 70 [] 65.5 2.8e-19
CP000869_0030 1/1 253 323 .. 1 70 [] 57.8 5.1e-17

Alignments of top-scoring domains:
CP000869_1095: domain 1 of 1, from 490 to 562: score 65.5, E = 2.8e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrllds..dkdpe.eareal
E +RIARELHD +gQ+L+a+k+ l++++++l+ + +++p+ + ++l
CP000869_1 490 EKTRIARELHDDLGQQLTALKMDLSVVEQRLRApaHAAPDaSVLAHL 536

deirelarealaevRrllgdLRpaal<-*
+ +r+l++ + a vRr++ dLRp l
CP000869_1 537 QGMRKLIDATVASVRRIAADLRPVML 562

CP000869_0030: domain 1 of 1, from 253 to 323: score 57.8, E = 5.1e-17
*->ERaRIARELHDsvgQsLsaiklqlelarrllds.dkdpeearealde
ERaR++RELHD+++Q++ ++kl+le a+++++ ++ +ea++al+
CP000869_0 253 ERARLSRELHDGISQMMVSAKLMLESALARFERgTVRVPEAERALAS 299

irelarealaevRrllgdLRpaal<-*
+ ++l+evRr+ ++LRpa l
CP000869_0 300 GVVRLGDTLREVRRISHALRPAML 323


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 3 0|=
-13 16 0|===
-12 43 24|===*===
-11 78 197|============ *
-10 215 457|=============================== *
-9 402 519|==========================================================*
-8 324 400|=============================================== *
-7 307 251|===================================*========
-6 244 142|====================*==============
-5 195 76|==========*=================
-4 128 39|=====*=============
-3 81 20|==*=========
-2 43 10|=*=====
-1 23 5|*===
0 17 2|*==
1 8 1|*=
2 5 0|=
3 8 0|==
4 5 0|=
5 0 0|
6 1 0|=
7 1 0|=
8 0 0|
> 9 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 1057.2141
P(chi-square) = 0

Total sequences searched: 2152

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: