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Classification of phyla is from NCBI page
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76 projects found  

4 accessions found for Burkholderia multivorans ATCC 17616  

Data for CP000870  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000870.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000870_0215 CDS_249406-247124 73.5 3.5e-21 1
CP000870_0127 CDS_148254-150653 72.1 9e-21 1
CP000870_0036 CDS_46287-47801 67.6 1.6e-19 1
CP000870_0532 CDS_585192-583804 67.5 1.8e-19 1
CP000870_0111 CDS_131060-129441 50.7 1e-14 1
CP000870_0484 CDS_530905-532656 49.2 2.7e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000870_0215 1/1 358 422 .. 1 87 [] 73.5 3.5e-21
CP000870_0127 1/1 425 490 .. 1 87 [] 72.1 9e-21
CP000870_0036 1/1 266 334 .. 1 87 [] 67.6 1.6e-19
CP000870_0532 1/1 236 301 .. 1 87 [] 67.5 1.8e-19
CP000870_0111 1/1 169 235 .. 1 87 [] 50.7 1e-14
CP000870_0484 1/1 217 283 .. 1 87 [] 49.2 2.7e-14

Alignments of top-scoring domains:
CP000870_0215: domain 1 of 1, from 358 to 422: score 73.5, E = 3.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla l HELR+PLt I++++el + +++++++ +
CP000870_0 358 AKDQFLAVLGHELRNPLTPISLALELVRS-------REGHATPNE-- 395

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +i+r+++++ rLi+dlLd sri g
CP000870_0 396 -------------IAIIQRQLDHMVRLIDDLLDVSRITRG 422

CP000870_0127: domain 1 of 1, from 425 to 490: score 72.1, E = 9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+e+la++sHELRTPL++I g +e+L++ + ++
CP000870_0 425 LKDELLATVSHELRTPLNVIYGWIEVLRN---------SGDDALR-- 460

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ i+r+a++l r++ d+Ld s + +g
CP000870_0 461 ----------VQAIDAIDRSARSLTRMVGDILDASSLSTG 490

CP000870_0036: domain 1 of 1, from 266 to 334: score 67.6, E = 1.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++an+sH+LRTPLt++ gy+e+L ++ ++l e++r
CP000870_0 266 QRRELIANISHDLRTPLTSLHGYLETLSLKA-------DTLAEPDR- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+++l ++ rL + l +l+r+e+g
CP000870_0 305 ----------RRYLSIALAQSAKVGRLAQALFELARLESG 334

CP000870_0532: domain 1 of 1, from 236 to 301: score 67.5, E = 1.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++f+a+++HELRTP++a+++ a+++l+ e+++e r
CP000870_0 236 AERRFTADAAHELRTPIAAVKAQAQVALA----------ERDDERR- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l+ +l+ +r rL+++lL lsr+++g
CP000870_0 272 ----------LHALRGVLEGCDRAARLVDQLLLLSRLDSG 301

CP000870_0111: domain 1 of 1, from 169 to 235: score 50.7, E = 1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f+a+l+HELR+ L+ +r + +L+ + +++ +
CP000870_0 169 RLSVFIAMLAHELRNHLAPLRHSVGVLQS---------LPDPAPAL- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ++r++ +l rL++dlLd ri +g
CP000870_0 206 ----------AQCRDAVHRQVAQLTRLVDDLLDVGRITSG 235

CP000870_0484: domain 1 of 1, from 217 to 283: score 49.2, E = 2.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+ +++H++++ L+aI+g+ + +l+ + +++ +
CP000870_0 217 ALGTFAGGVAHDFNNILAAILGFGDRALA---------GVAPDAPA- 253

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e +l+++er + L++++L++sr +
CP000870_0 254 ----------HRDIEQVLKAGERARLLVERILTFSRSGPT 283


Histogram of all scores:
score obs exp (one = represents 3 sequences)
----- --- ---
-14 5 0|==
-13 9 0|===
-12 29 18|=====*====
-11 81 97|=========================== *
-10 128 180|=========================================== *
-9 166 186|======================================================== *
-8 138 139|==============================================*
-7 121 88|=============================*===========
-6 55 50|================*==
-5 43 27|========*======
-4 18 14|====*=
-3 13 7|==*==
-2 4 4|=*
-1 5 2|*=
0 0 1|*
> 1 8 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 51.0059
P(chi-square) = 6.965e-08

Total sequences searched: 823

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: