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2 accessions found for Brucella canis ATCC 23365  

Data for CP000872  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000872.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000872_0600 CDS_610353-608002 90.3 1.5e-25 1
CP000872_1555 CDS_1548890-1551997 88.7 4.3e-25 1
CP000872_0288 CDS_310212-311528 85.6 3.4e-24 1
CP000872_2014 CDS_2012057-2013862 73.9 7e-21 1
CP000872_2020 CDS_2017501-2020080 69.6 1.1e-19 1
CP000872_0561 CDS_568673-570502 63.3 6.8e-18 1
CP000872_1079 CDS_1096006-1094864 55.3 1.3e-15 1
CP000872_0597 CDS_601098-602501 48.8 9.1e-14 1
CP000872_0308 CDS_330646-327122 45.0 1.1e-12 1
CP000872_1077 CDS_1093301-1090977 42.4 5.7e-12 1
CP000872_0130 CDS_148833-150125 40.1 2.6e-11 1
CP000872_0998 CDS_1002535-1005231 39.5 3.9e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000872_0600 1/1 543 612 .. 1 87 [] 90.3 1.5e-25
CP000872_1555 1/1 795 864 .. 1 87 [] 88.7 4.3e-25
CP000872_0288 1/1 200 267 .. 1 87 [] 85.6 3.4e-24
CP000872_2014 1/1 364 429 .. 1 87 [] 73.9 7e-21
CP000872_2020 1/1 627 695 .. 1 87 [] 69.6 1.1e-19
CP000872_0561 1/1 328 397 .. 1 87 [] 63.3 6.8e-18
CP000872_1079 1/1 135 199 .. 1 87 [] 55.3 1.3e-15
CP000872_0597 1/1 240 306 .. 1 87 [] 48.8 9.1e-14
CP000872_0308 1/1 801 866 .. 1 87 [] 45.0 1.1e-12
CP000872_1077 1/1 525 596 .. 1 87 [] 42.4 5.7e-12
CP000872_0130 1/1 209 275 .. 1 87 [] 40.1 2.6e-11
CP000872_0998 1/1 520 586 .. 1 87 [] 39.5 3.9e-11

Alignments of top-scoring domains:
CP000872_0600: domain 1 of 1, from 543 to 612: score 90.3, E = 1.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g++e+++++ + ++l+++
CP000872_0 543 AKSEFLANMSHELRTPLNAIIGFSEMIQAGTF------GPLGSDR-- 581

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+ey++ i+ +++ ll+ ind+Ld+s+ieag
CP000872_0 582 ---------YEEYINDIHTSGNFLLNVINDILDMSKIEAG 612

CP000872_1555: domain 1 of 1, from 795 to 864: score 88.7, E = 4.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+efla +sHE+RTPL+aI+g++el+ + + ++ + +
CP000872_1 795 QKTEFLARISHEIRTPLNAIIGFSELMAD------EKFGPIGNDR-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr+yl+ i r++++ l+L+ndlLd+s+ieag
CP000872_1 834 ---------YRDYLRDINRSGNYVLALVNDLLDISKIEAG 864

CP000872_0288: domain 1 of 1, from 200 to 267: score 85.6, E = 3.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f+an+sHELRTPL+++rg++e+L+ +++++ ++
CP000872_0 200 MRSDFIANASHELRTPLASLRGFIETLQG---------PARNDAAAR 237

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++++++aer++rLi+dlL lsr+e
CP000872_0 238 ----------DRFLDIMQKQAERMSRLIDDLLSLSRLEMR 267

CP000872_2014: domain 1 of 1, from 364 to 429: score 73.9, E = 7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++e r
CP000872_2 364 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTDESR- 399

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l++i+++++rl+rLi d+ d sr++a+
CP000872_2 400 ----------KRLLDVIQHDVRRLDRLITDISDVSRLDAE 429

CP000872_2020: domain 1 of 1, from 627 to 695: score 69.6, E = 1.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++s ELR PLt I+g++elL++ + + l+e q
CP000872_2 627 IKNDFVQHVSYELRSPLTNIIGFTELLQT------PAFGSLNERQ-- 665

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
eyl+ i ++ ll ++nd+Ldl+ +ag
CP000872_2 666 ----------LEYLDHISTSSSVLLTIVNDILDLATVDAG 695

CP000872_0561: domain 1 of 1, from 328 to 397: score 63.3, E = 6.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+++la++sHELRTPL++I+g++++L + ++l ++ +
CP000872_0 328 GKGRLLATVSHELRTPLNSIIGFSDMLTH------EIGGKLASDRQ- 367

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey i++++++ll+L+n +Ld sr+e+g
CP000872_0 368 ----------REYAGLIHQSGHYLLELVNAVLDNSRLETG 397

CP000872_1079: domain 1 of 1, from 135 to 199: score 55.3, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++++l+HE+++PL++Irg+a+lL+ s+e+
CP000872_1 135 SVTGLASMLAHEIKNPLSGIRGAAQLLEQ----------VVSDED-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i +e++r+ +L++++ +s +
CP000872_1 170 ----------RALARLITEETDRIVSLVDRMEVFSDERPI 199

CP000872_0597: domain 1 of 1, from 240 to 306: score 48.8, E = 9.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + n++H+L+TPLt +r ae +l +e+ e++
CP000872_0 240 GLKQVSDNIAHDLKTPLTRLRNRAEEALG---------GEKVEPE-- 275

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yr +le i+ e+++l r n +L +sr+eag
CP000872_0 276 ---------YRAALEDIIGESDQLIRTFNAILMISRLEAG 306

CP000872_0308: domain 1 of 1, from 801 to 866: score 45.0, E = 1.1e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++fla++ H++ +PL+a r+y+ +L e +l+ ++
CP000872_0 801 GKTRFLAAAGHDILQPLNAARLYSTALAE----------KLGRSET- 836

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + i++++e ++++ +Ld+sr+++g
CP000872_0 837 ----------SEFARNIDSSLEAVEAILGMVLDISRLDTG 866

CP000872_1077: domain 1 of 1, from 525 to 596: score 42.4, E = 5.7e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ ++ + + e
CP000872_1 525 AWADVARRIAHEIKNPLTPIQLSAERIRRRY----GKVITEDREV-- 565

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ti+r++ + r+++++ ++r+ +
CP000872_1 566 ---------FDQCTDTIIRQVGDIGRMVDEFSAFARMPKP 596

CP000872_0130: domain 1 of 1, from 209 to 275: score 40.1, E = 2.6e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HEL TPL++I + ++ +++ +++++
CP000872_0 209 ALDGLAAAAAHELGTPLATIALVVKEMQR--------AHTKDPGL-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e + ++++++r+++++++l ls +++
CP000872_0 246 ----------EEDIALLHSQTQRCREILQRLTSLSSEGEE 275

CP000872_0998: domain 1 of 1, from 520 to 586: score 39.5, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ LtaI++ ++lLl++ + +s++
CP000872_0 520 AVGQLAGGIAHDFNNVLTAIIMSSDLLLTN--------HRASDPS-- 556

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ i++ a+r +L+++lL +sr ++
CP000872_0 557 ----------FPDIMNIKQNANRAASLVRQLLAFSRRQTL 586


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 16 0|===
-13 40 1|*=====
-12 145 48|======*==============
-11 247 249|===================================*
-10 354 462|=================================================== *
-9 409 477|==========================================================*
-8 333 357|================================================ *
-7 242 225|================================*==
-6 127 129|==================*
-5 77 71|==========*
-4 47 38|=====*=
-3 22 20|==*=
-2 12 10|=*
-1 7 5|*
0 3 2|*
1 1 1|*
2 0 0|
3 1 0|=
> 4 16 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 237.1618
P(chi-square) = 2.652e-314

Total sequences searched: 2102

Whole sequence top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 12
Satisfying E cutoff: 12
Total memory: 25K


Acknowledgements:

This research is funded by:

Developed by: