Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Brucella canis ATCC 23365  

Data for CP000873  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000873.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000873_0211 CDS_217357-216017 44.9 6.2e-13 1
CP000873_0445 CDS_460425-459001 35.6 2.7e-10 1
CP000873_0037 CDS_37523-38593 34.0 7.6e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000873_0211 1/1 227 292 .. 1 87 [] 44.9 6.2e-13
CP000873_0445 1/1 264 322 .. 1 87 [] 35.6 2.7e-10
CP000873_0037 1/1 129 199 .. 1 87 [] 34.0 7.6e-10

Alignments of top-scoring domains:
CP000873_0211: domain 1 of 1, from 227 to 292: score 44.9, E = 6.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+an +HELRTP++a ++ ++ L + ++++
CP000873_0 227 AERSFTANSAHELRTPIAAALAQTQRLIA---------ETQDKAA-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e i+ +++rl+rL + l++l+++e g
CP000873_0 263 ----------RDRGEQIEAALHRLSRLSEKLMQLAKAEGG 292

CP000873_0445: domain 1 of 1, from 264 to 322: score 35.6, E = 2.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H+LRTPLt +++ elL +
CP000873_0 264 EREQLAAALAHDLRTPLTRMKLRMELLDD------------------ 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ r+++ ++++ + + d++ e
CP000873_0 293 ----------DALRQSLSRDLNDIEAISRSVIDFATSELA 322

CP000873_0037: domain 1 of 1, from 129 to 199: score 34.0, E = 7.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++++++HE +PL aI a++ +++l a++++ +e
CP000873_0 129 TLGQLTSSIAHEVSQPLVAIEISASAGRRWL----AQSPPNNERA-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+i +++r +++++++ lsr e +
CP000873_0 170 ----------AAAIERISADSHRAIEILDRVRRLSRGEKP 199


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-15 2 0|=
-14 12 0|===
-13 27 0|======
-12 73 26|=====*=========
-11 101 136|===================== *
-10 165 252|================================= *
-9 239 260|================================================ *
-8 191 195|======================================*
-7 134 123|========================*==
-6 98 70|=============*======
-5 38 38|=======*
-4 29 20|===*==
-3 16 10|=*==
-2 11 5|*==
-1 4 3|*
0 2 1|*
1 1 0|=
2 2 0|=
> 3 4 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 146.2996
P(chi-square) = 2.149e-26

Total sequences searched: 1149

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: