Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
14 projects found  

3 accessions found for Herpetosiphon aurantiacus ATCC 23779  

Data for CP000876  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000876.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000876_0199 CDS_289760-287673 46.7 1e-14 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000876_0199 1/1 486 550 .. 1 70 [] 46.7 1e-14

Alignments of top-scoring domains:
CP000876_0199: domain 1 of 1, from 486 to 550: score 46.7, E = 1e-14
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ERa +ARELHD+vgQ+L+++kl le + r++++e+
CP000876_0 486 ERAALARELHDGVGQALTGLKLYLESTP-----LQPITVWRDRIHEA 527

relarealaevRrllgdLRpaal<-*
+ + + l++vR+l d+Rpaal
CP000876_0 528 TGQVIDILSQVRQLSLDIRPAAL 550


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 4 0|====
-12 6 2|=*====
-11 14 21|============== *
-10 33 49|================================= *
-9 45 55|============================================= *
-8 28 42|============================ *
-7 27 27|==========================*
-6 17 15|==============*==
-5 23 8|=======*===============
-4 11 4|===*=======
-3 7 2|=*=====
-2 5 1|*====
-1 2 0|==
0 2 0|==
1 2 0|==
2 2 0|==
3 1 0|=
> 4 2 -|==


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 41.9035
P(chi-square) = 1.921e-07

Total sequences searched: 231

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: