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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Petrotoga mobilis SJ95  

Data for CP000879  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000879.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000879_0096 CDS_94006-95283 79.0 2.2e-22 1
CP000879_0825 CDS_898373-897057 70.5 5.7e-20 1
CP000879_0850 CDS_930394-931674 68.5 2.1e-19 1
CP000879_1864 CDS_2133447-2132476 56.7 4.5e-16 1
CP000879_0843 CDS_923743-922502 56.6 5e-16 1
CP000879_1573 CDS_1786294-1783505 56.3 5.9e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000879_0096 1/1 211 278 .. 1 87 [] 79.0 2.2e-22
CP000879_0825 1/1 216 282 .. 1 87 [] 70.5 5.7e-20
CP000879_0850 1/1 192 258 .. 1 87 [] 68.5 2.1e-19
CP000879_1864 1/1 109 174 .. 1 87 [] 56.7 4.5e-16
CP000879_0843 1/1 185 252 .. 1 87 [] 56.6 5e-16
CP000879_1573 1/1 712 777 .. 1 87 [] 56.3 5.9e-16

Alignments of top-scoring domains:
CP000879_0096: domain 1 of 1, from 211 to 278: score 79.0, E = 2.2e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f++++sHELRTPLt+I gy+++L++ +++ +++ +
CP000879_0 211 IQNQFVSDVSHELRTPLTSINGYIKMLKR--------WGKNDPKIM- 248

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++i+ ++e+l++L+++lL l++ + +
CP000879_0 249 ----------EESLNSIEASSEYLRDLVEQLLLLTKNDYQ 278

CP000879_0825: domain 1 of 1, from 216 to 282: score 70.5, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a++sH+LRTPL+ I++ ++l l+ ++s ++
CP000879_0 216 QQKQFTADVSHDLRTPLSIIQAESSLTLK---------KDRSIDE-- 251

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ le il+e+ +++++i+ lL l+r ++
CP000879_0 252 ---------YKKSLELILEETSYMSEIIDKLLFLARSDNK 282

CP000879_0850: domain 1 of 1, from 192 to 258: score 68.5, E = 2.1e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++efl +sHE+RTPL++I+gy+e++l +++l+ e
CP000879_0 192 LRREFLTIMSHEMRTPLSVISGYLETILH--------EPNLDLEI-- 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l++i++e+ rl r+ ndlLd++r+e +
CP000879_0 229 ----------YQPLKKIEEEISRLTRMFNDLLDIERLEKN 258

CP000879_1864: domain 1 of 1, from 109 to 174: score 56.7, E = 4.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+ ++sHELRTPLt +g++++L++++ + q
CP000879_1 109 VKEDFITSVSHELRTPLTIAKGNTQILKDFMK----------DNQ-- 143

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + +i+++++r++++i++l ls++e g
CP000879_1 144 ---------FIKQVTKIEESLDRIENIISQLTLLSKAEFG 174

CP000879_0843: domain 1 of 1, from 185 to 252: score 56.6, E = 5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
s l+ +sHELRTPLt+I+g+ae++l++ ++l +++
CP000879_0 185 TNSNYLSFISHELRTPLTSIIGFAETILNN--------EDLKKDEI- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++++il +a+++++L++d+ ++ ++ +
CP000879_0 223 ----------KSIIRKILFSAKHMNSLLDDISTFNKLNRE 252

CP000879_1573: domain 1 of 1, from 712 to 777: score 56.3, E = 5.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a ++HE R+P+t I g++ + + +++
CP000879_1 712 AMGEMTARIAHEVRNPITIIGGFLNRIAK----------MNEMDDI- 747

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i++e+ rl++++n++L++sr +
CP000879_1 748 ----------QKYTQIIKEELSRLEHIVNEILEYSRGGKI 777


Histogram of all scores:
score obs exp (one = represents 6 sequences)
----- --- ---
-14 2 0|=
-13 17 1|*==
-12 57 43|=======*==
-11 218 224|=====================================*
-10 313 417|===================================================== *
-9 341 431|========================================================= *
-8 337 322|=====================================================*===
-7 240 203|=================================*======
-6 145 117|===================*=====
-5 88 64|==========*====
-4 54 34|=====*===
-3 31 18|==*===
-2 22 9|=*==
-1 8 4|*=
0 5 2|*
1 6 1|*
2 0 0|
3 2 0|=
4 0 0|
> 5 12 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 108.7934
P(chi-square) = 9.341e-19

Total sequences searched: 1898

Whole sequence top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 6
Satisfying E cutoff: 6
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: