Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Petrotoga mobilis SJ95  

Data for CP000879  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000879.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000879_0291 CDS_321272-320388 43.1 2e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000879_0291 1/1 87 160 .. 1 75 [. 43.1 2e-12

Alignments of top-scoring domains:
CP000879_0291: domain 1 of 1, from 87 to 160: score 43.1, E = 2e-12
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikd.EVleaLrEsqnRVl
E HHR+KNNLQ I+SL +L ++k ++V e L + + ++
CP000879_0 87 ESHHRIKNNLQSIISLMSLYKMSIKKDS---RkDVAEMLDDLMSKIK 130

SmAliHEeLYkse.dldtvdfseYlekLte<-*
S+A +HE L+k + + + ++++e + k+++
CP000879_0 131 SIAAVHELLSKDKlGRSIINLKEMIIKIVK 160


Histogram of all scores:
score obs exp (one = represents 8 sequences)
----- --- ---
-14 3 0|=
-13 8 11|=*
-12 29 124|==== *
-11 348 347|===========================================*
-10 339 449|=========================================== *
-9 448 379|===============================================*========
-8 281 254|===============================*====
-7 158 151|==================*=
-6 158 84|==========*=========
-5 51 45|=====*=
-4 32 24|==*=
-3 23 12|=*=
-2 6 6|*
-1 6 3|*
0 4 1|*
1 1 0|=
2 0 0|
3 1 0|=
> 4 2 -|=


% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 193.8669
P(chi-square) = 1.39e-35

Total sequences searched: 1898

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: