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Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Salmonella enterica subsp. arizonae serovar 62:z4,z23:--  

Data for CP000880  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000880.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000880_0004 CDS_7765-5009 100.2 5.4e-28 1
CP000880_2433 CDS_2451825-2450530 90.2 3.6e-25 1
CP000880_0590 CDS_621556-624342 80.6 1.9e-22 1
CP000880_1529 CDS_1536979-1539789 79.6 3.7e-22 1
CP000880_4125 CDS_4222940-4225306 78.9 5.6e-22 1
CP000880_3657 CDS_3752084-3749394 72.8 2.9e-20 1
CP000880_0297 CDS_305792-307177 68.3 5.6e-19 1
CP000880_3447 CDS_3521640-3523013 66.6 1.7e-18 1
CP000880_3355 CDS_3421735-3420272 62.5 2.5e-17 1
CP000880_2156 CDS_2169353-2172037 61.1 6.5e-17 1
CP000880_3510 CDS_3582592-3583641 60.9 7.3e-17 1
CP000880_0729 CDS_778600-777197 58.4 3.6e-16 1
CP000880_4272 CDS_4366856-4365507 55.9 1.9e-15 1
CP000880_1837 CDS_1832476-1833834 55.2 2.9e-15 1
CP000880_3949 CDS_4063878-4065230 54.9 3.6e-15 1
CP000880_1448 CDS_1465477-1466778 47.4 4.7e-13 1
CP000880_3244 CDS_3272661-3273710 44.9 2.4e-12 1
CP000880_0184 CDS_174817-176232 38.7 1.4e-10 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000880_0004 1/1 292 357 .. 1 87 [] 100.2 5.4e-28
CP000880_2433 1/1 203 269 .. 1 87 [] 90.2 3.6e-25
CP000880_0590 1/1 449 514 .. 1 87 [] 80.6 1.9e-22
CP000880_1529 1/1 411 476 .. 1 87 [] 79.6 3.7e-22
CP000880_4125 1/1 292 357 .. 1 87 [] 78.9 5.6e-22
CP000880_3657 1/1 428 493 .. 1 87 [] 72.8 2.9e-20
CP000880_0297 1/1 234 302 .. 1 87 [] 68.3 5.6e-19
CP000880_3447 1/1 238 300 .. 1 87 [] 66.6 1.7e-18
CP000880_3355 1/1 268 334 .. 1 87 [] 62.5 2.5e-17
CP000880_2156 1/1 663 730 .. 1 87 [] 61.1 6.5e-17
CP000880_3510 1/1 129 186 .. 1 79 [. 60.9 7.3e-17
CP000880_0729 1/1 240 304 .. 1 87 [] 58.4 3.6e-16
CP000880_4272 1/1 236 302 .. 1 87 [] 55.9 1.9e-15
CP000880_1837 1/1 236 302 .. 1 87 [] 55.2 2.9e-15
CP000880_3949 1/1 233 293 .. 1 87 [] 54.9 3.6e-15
CP000880_1448 1/1 211 271 .. 1 87 [] 47.4 4.7e-13
CP000880_3244 1/1 135 195 .. 1 87 [] 44.9 2.4e-12
CP000880_0184 1/1 246 311 .. 1 87 [] 38.7 1.4e-10

Alignments of top-scoring domains:
CP000880_0004: domain 1 of 1, from 292 to 357: score 100.2, E = 5.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000880_0 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000880_0 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000880_2433: domain 1 of 1, from 203 to 269: score 90.2, E = 3.6e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP000880_2 203 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QTLEGATR- 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP000880_2 240 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 269

CP000880_0590: domain 1 of 1, from 449 to 514: score 80.6, E = 1.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000880_0 449 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 484

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + +++ ll++i+d+Ld+s+ie++
CP000880_0 485 ----------DRLVTAMNNSSSLLLKIISDILDFSKIESE 514

CP000880_1529: domain 1 of 1, from 411 to 476: score 79.6, E = 3.7e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ +q
CP000880_1 411 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIKQ-- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t++ ++ +ll Lin+lLd+srie+g
CP000880_1 447 ----------QGLADTARYCTLSLLTLINNLLDFSRIESG 476

CP000880_4125: domain 1 of 1, from 292 to 357: score 78.9, E = 5.6e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP000880_4 292 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000880_4 328 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 357

CP000880_3657: domain 1 of 1, from 428 to 493: score 72.8, E = 2.9e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
CP000880_3 428 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
CP000880_3 464 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 493

CP000880_0297: domain 1 of 1, from 234 to 302: score 68.3, E = 5.6e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000880_0 234 QRHQFLRHLSHELKTPLASMREGTELLADRV------VGPLTPEQ-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ +++ l++Li++lLd+ r
CP000880_0 273 ----------KEVVDILDVSSRNLQKLIEQLLDYNRKLVD 302

CP000880_3447: domain 1 of 1, from 238 to 300: score 66.6, E = 1.7e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000880_3 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RSGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000880_3 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000880_3355: domain 1 of 1, from 268 to 334: score 62.5, E = 2.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP000880_3 268 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 304

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP000880_3 305 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 334

CP000880_2156: domain 1 of 1, from 663 to 730: score 61.1, E = 6.5e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP000880_2 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000880_2 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

CP000880_3510: domain 1 of 1, from 129 to 186: score 60.9, E = 7.3e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000880_3 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPSL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000880_3 165 ----------TEYTKVIIEQADRLRNLVDRLL 186

CP000880_0729: domain 1 of 1, from 240 to 304: score 58.4, E = 3.6e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP000880_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000880_0 278 -------------VISLQAEVGTLTKLVDDLHQLSLSDEG 304

CP000880_4272: domain 1 of 1, from 236 to 302: score 55.9, E = 1.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP000880_4 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP000880_4 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP000880_1837: domain 1 of 1, from 236 to 302: score 55.2, E = 2.9e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s e+
CP000880_1 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSIEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r e++
CP000880_1 272 ---------YQQALVDNIEELEGLSRLTENILFLARVEHQ 302

CP000880_3949: domain 1 of 1, from 233 to 293: score 54.9, E = 3.6e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP000880_3 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000880_3 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000880_1448: domain 1 of 1, from 211 to 271: score 47.4, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP000880_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000880_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP000880_3244: domain 1 of 1, from 135 to 195: score 44.9, E = 2.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000880_3 135 NERLFTADVAHELRTPLAGVRLHLELLSK---------TH------- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP000880_3 166 ----------NIDVAPLIARLDQMMDSVSQLLQLARVGQS 195

CP000880_0184: domain 1 of 1, from 246 to 311: score 38.7, E = 1.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP000880_0 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQQPRH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e le + +++ +L ++lL+ls +
CP000880_0 281 ---------WYESLEAMSVTLDSTIQLTERLLQLSAVKHK 311


Histogram of all scores:
score obs exp (one = represents 15 sequences)
----- --- ---
-15 5 0|=
-14 33 0|===
-13 126 3|*========
-12 278 103|======*============
-11 499 534|================================== *
-10 754 991|=================================================== *
-9 843 1024|========================================================= *
-8 724 766|================================================= *
-7 493 483|================================*
-6 322 278|==================*===
-5 186 152|==========*==
-4 94 81|=====*=
-3 43 43|==*
-2 36 22|=*=
-1 27 11|*=
0 15 6|*
1 5 3|*
2 5 1|*
> 3 22 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 446.9655
P(chi-square) = 0

Total sequences searched: 4510

Whole sequence top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 18
Satisfying E cutoff: 18
Total memory: 28K


Acknowledgements:

This research is funded by:

Developed by: