Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7  

Data for CP000886  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000886.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000886_3574 CDS_3067664-3070420 100.2 6.7e-28 1
CP000886_3107 CDS_2666813-2665548 90.2 4.5e-25 1
CP000886_1880 CDS_1642315-1645077 82.3 7.6e-23 1
CP000886_0700 CDS_672256-675102 81.3 1.5e-22 1
CP000886_4026 CDS_3452499-3450163 78.9 6.9e-22 1
CP000886_4630 CDS_3975392-3978079 72.8 3.7e-20 1
CP000886_0355 CDS_335530-336972 68.1 8.2e-19 1
CP000886_4877 CDS_4211134-4209761 67.0 1.6e-18 1
CP000886_0873 CDS_822695-821292 63.5 1.6e-17 1
CP000886_5000 CDS_4329107-4330690 62.5 3.1e-17 1
CP000886_2761 CDS_2355047-2357731 61.1 8e-17 1
CP000886_4817 CDS_4160667-4159618 60.1 1.5e-16 1
CP000886_5588 CDS_4846465-4847889 59.8 1.8e-16 1
CP000886_2397 CDS_2024395-2025759 57.5 8.3e-16 1
CP000886_3854 CDS_3301812-3303161 55.9 2.4e-15 1
CP000886_4229 CDS_3617577-3616225 54.9 4.5e-15 1
CP000886_5122 CDS_4459673-4458594 47.7 5e-13 1
CP000886_1797 CDS_1573641-1574942 47.4 5.9e-13 1
CP000886_3361 CDS_2897916-2896501 36.6 6.8e-10 1
CP000886_0551 CDS_535227-537233 35.3 1.6e-09 1
CP000886_1888 CDS_1650533-1648785 31.5 1.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000886_3574 1/1 292 357 .. 1 87 [] 100.2 6.7e-28
CP000886_3107 1/1 193 259 .. 1 87 [] 90.2 4.5e-25
CP000886_1880 1/1 395 460 .. 1 87 [] 82.3 7.6e-23
CP000886_0700 1/1 469 534 .. 1 87 [] 81.3 1.5e-22
CP000886_4026 1/1 282 347 .. 1 87 [] 78.9 6.9e-22
CP000886_4630 1/1 428 493 .. 1 87 [] 72.8 3.7e-20
CP000886_0355 1/1 253 321 .. 1 87 [] 68.1 8.2e-19
CP000886_4877 1/1 238 300 .. 1 87 [] 67.0 1.6e-18
CP000886_0873 1/1 240 304 .. 1 87 [] 63.5 1.6e-17
CP000886_5000 1/1 308 374 .. 1 87 [] 62.5 3.1e-17
CP000886_2761 1/1 663 730 .. 1 87 [] 61.1 8e-17
CP000886_4817 1/1 129 186 .. 1 79 [. 60.1 1.5e-16
CP000886_5588 1/1 255 320 .. 1 87 [] 59.8 1.8e-16
CP000886_2397 1/1 236 302 .. 1 87 [] 57.5 8.3e-16
CP000886_3854 1/1 236 302 .. 1 87 [] 55.9 2.4e-15
CP000886_4229 1/1 233 293 .. 1 87 [] 54.9 4.5e-15
CP000886_5122 1/1 145 205 .. 1 87 [] 47.7 5e-13
CP000886_1797 1/1 211 271 .. 1 87 [] 47.4 5.9e-13
CP000886_3361 1/1 246 311 .. 1 87 [] 36.6 6.8e-10
CP000886_0551 1/1 447 515 .. 1 87 [] 35.3 1.6e-09
CP000886_1888 1/1 347 416 .. 1 87 [] 31.5 1.9e-08

Alignments of top-scoring domains:
CP000886_3574: domain 1 of 1, from 292 to 357: score 100.2, E = 6.7e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g++ l l+ tel++ q
CP000886_3 292 IKSEFLANMSHELRTPLNGVIGFTRLTLK---------TELNPTQ-- 327

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ti+r+a+ ll++ind+Ld+s++eag
CP000886_3 328 ----------RDHLNTIERSANNLLAIINDVLDFSKLEAG 357

CP000886_3107: domain 1 of 1, from 193 to 259: score 90.2, E = 4.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ f+an+sHELRTPLt+++gy+e+++e ++l +r
CP000886_3 193 ARRNFFANVSHELRTPLTVLQGYLEMMQE---------QALEGATR- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+t+++++ r++ L+ +lL+ls+iea
CP000886_3 230 ----------EKALHTMREQTYRMEGLVKQLLTLSKIEAA 259

CP000886_1880: domain 1 of 1, from 395 to 460: score 82.3, E = 7.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks l +sHELRTP+++++g++elL++ t+l+ eq
CP000886_1 395 RKSIHLTVISHELRTPMNGVLGAIELLQT---------TPLNIEQ-- 430

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + +t+++++ +ll++in+lLd+srie+g
CP000886_1 431 ----------QGLADTARNCTLSLLAIINNLLDFSRIESG 460

CP000886_0700: domain 1 of 1, from 469 to 534: score 81.3, E = 1.5e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks fla++sHELRTPL +I+g+++lL++ el+
CP000886_0 469 SKSMFLATVSHELRTPLYGIIGNLDLLQT---------KELPKGV-- 504

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + +++ ll++i+d+Ld+s+ie++
CP000886_0 505 ----------ERLVTAMNNSSSLLLKIISDILDFSKIESE 534

CP000886_4026: domain 1 of 1, from 282 to 347: score 78.9, E = 6.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ f++++sHELRTPL++I g++ +Ll+ t+l++eq
CP000886_4 282 DKTTFISTISHELRTPLNGIVGLSRILLD---------TDLTAEQ-- 317

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti+ +a l ++ nd+ d+ ++e
CP000886_4 318 ----------EKYLKTIHVSAVTLGNIFNDIIDMDKMERR 347

CP000886_4630: domain 1 of 1, from 428 to 493: score 72.8, E = 3.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTPL +I+g+++lL + +l +
CP000886_4 428 AKSTFLAAMSHEIRTPLYGILGTVQLLAD---------KPLMANY-- 463

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l+ i +++e+ll+++nd+Ld+s ie g
CP000886_4 464 ----------RDDLQAINDSGESLLAILNDILDYSAIEVG 493

CP000886_0355: domain 1 of 1, from 253 to 321: score 68.1, E = 8.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +fl++lsHEL+TPL+++r +elL +++ ++l++eq
CP000886_0 253 QRHQFLRHLSHELKTPLASMREGTELLADQV------VGPLTPEQ-- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +++++ +++ l++Li++lLd+ r
CP000886_0 292 ----------KEVVDILDGSSRNLQKLIEQLLDYNRKLVD 321

CP000886_4877: domain 1 of 1, from 238 to 300: score 67.0, E = 1.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELRTPLt +++ + lL++ +++
CP000886_4 238 SQQRLLSDISHELRTPLTRLQLGTALLRR---------RGGESKE-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
le+i+ ea+rl+++indlL +sr ++
CP000886_4 274 -------------LERIETEAQRLDSMINDLLVMSRNQQK 300

CP000886_0873: domain 1 of 1, from 240 to 304: score 63.5, E = 1.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL+++rg +e++++++ ++e
CP000886_0 240 MRRDFMADISHELRTPLAVLRGELEAIQDGV-------RQFTPES-- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ e+ l +L++dl +ls ++g
CP000886_0 278 -------------VTSLQAEVGTLTKLVDDLHQLSLSDEG 304

CP000886_5000: domain 1 of 1, from 308 to 374: score 62.5, E = 3.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++a+++HE+R+PL++I+g+a+ e +t+++ e
CP000886_5 308 AMGHLAAGVAHEIRNPLSSIKGLAKYFAE--------RTPAGGES-- 344

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+ +++ +ea+rl+r +++lL+l + +
CP000886_5 345 ----------HELAQVMAKEADRLNRVVSELLELVKPAHL 374

CP000886_2761: domain 1 of 1, from 663 to 730: score 61.1, E = 8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +la+lsH+LRTPLt++ g ae+L +l + +++++
CP000886_2 663 IRNALLAALSHDLRTPLTVLFGQAEILTLDL-------ASAGSPH-- 700

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i++ + rL+n+lLd++ri++g
CP000886_2 701 ----------ARQASEIRQHILNTTRLVNNLLDMARIQSG 730

CP000886_4817: domain 1 of 1, from 129 to 186: score 60.1, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++++l+HE+++PL ++rg+a+lL + +l+++ +
CP000886_4 129 AARDLVRGLAHEIKNPLGGLRGAAQLLSK----------ALPDPAL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i+++a+rl++L+++lL
CP000886_4 165 ----------MEYTKVIIEQADRLRNLVDRLL 186

CP000886_5588: domain 1 of 1, from 255 to 320: score 59.8, E = 1.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ + +l HEL+ PL+aIrg+ae+L+e ++ +
CP000886_5 255 EIEQYVYALTHELKSPLAAIRGAAEILRE---------GPPADVV-- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e il + r+++L++ lL +r+e+
CP000886_5 291 ----------TRFTENILAQNTRMQALVETLLRQARLENR 320

CP000886_2397: domain 1 of 1, from 236 to 302: score 57.5, E = 8.3e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +l+HELRTP++ ++g +++l +e+s+e+
CP000886_2 236 RLNQFADDLAHELRTPVNILLGKNQVMLS---------QERSAEE-- 271

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++l ++e+e l+rL +++L l+r+e++
CP000886_2 272 ---------YQQALVDNIEELEGLSRLTENILFLARAEHQ 302

CP000886_3854: domain 1 of 1, from 236 to 302: score 55.9, E = 2.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+++++HELR PL+a++ +e+++ + ++ r
CP000886_3 236 RERRFTSDAAHELRSPLAALKVQTEVAQL---------SGDDPLSR- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l ++ ++r rL+++lL+lsr+++
CP000886_3 273 ----------DKALTQLHAGIDRATRLVDQLLTLSRLDSL 302

CP000886_4229: domain 1 of 1, from 233 to 293: score 54.9, E = 4.5e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ++a++sH+LRTPLt Ir+++e++ e e+
CP000886_4 233 DRTLLMAGVSHDLRTPLTRIRLATEMMGE--------------ED-- 263

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e+i +++e ++++i+++ d+ r +++
CP000886_4 264 ----------GYLAESINKDIEECNAIIEQFIDYLRTGQE 293

CP000886_5122: domain 1 of 1, from 145 to 205: score 47.7, E = 5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ f+a+++HELRTPL+++r+++elL + t+
CP000886_5 145 NERLFTADVAHELRTPLSGVRLHLELLSK---------TH------- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ ++++ + +++lL+l+r ++
CP000886_5 176 ----------NVDVAPLIARLDQMMDSVSQLLQLARVGQS 205

CP000886_1797: domain 1 of 1, from 211 to 271: score 47.4, E = 5.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k +++ +++HELRTPL +r +e+ ++ l++++
CP000886_1 211 SKKQLIDGIAHELRTPLVRLRYRLEMSEN-----------LTPPE-- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + r++ +l++Li++lL+++r++ +
CP000886_1 245 -------------SQALNRDIGQLEALIEELLTYARLDRP 271

CP000886_3361: domain 1 of 1, from 246 to 311: score 36.6, E = 6.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f a++sH+L+TPL+++++ a ++l+ + + +
CP000886_3 246 RQERFSADASHQLKTPLAVLKTQAAVALA----------SQHPHH-- 280

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e l+ + +++ +L ++lL+ls +
CP000886_3 281 ---------WYESLQAMSVTLDSTIQLTERLLQLSAVKHK 311

CP000886_0551: domain 1 of 1, from 447 to 515: score 35.3, E = 1.6e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l+HE+++PL+a+++y+ ++ + a+++ +s +
CP000886_0 447 VVGQTMTTLAHEINQPLNALSMYLFTAGR------AIEQGQSGQA-- 485

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +++ ++r++++i+ l++++r +
CP000886_0 486 ----------RNTLTKAEGLINRIDAIIRSLRQFTRRAEL 515

CP000886_1888: domain 1 of 1, from 347 to 416: score 31.5, E = 1.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++++ +HEL++PL+aIr ya+ +l +l +++e++ l
CP000886_1 347 VLGEMTSGFAHELNQPLSAIRHYAQGCLIRL-------RAADEQHPL 386

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+le i+++a+r + +++l+ +g
CP000886_1 387 ----------LPALEQIDQQAQRGADTLRNLRHWVSQAQG 416


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-17 1 0|=
-16 1 0|=
-15 27 0|==
-14 176 0|===========
-13 336 4|*====================
-12 465 128|=======*======================
-11 674 663|=========================================*=
-10 856 1231|====================================================== *
-9 922 1271|==========================================================*
-8 795 952|================================================== *
-7 559 600|=================================== *
-6 322 345|=====================*
-5 223 189|===========*==
-4 97 101|======*
-3 41 53|===*
-2 30 28|=*
-1 25 14|*=
0 14 7|*
1 6 3|*
2 6 2|*
3 2 1|*
> 4 23 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 1150.1643
P(chi-square) = 0

Total sequences searched: 5601

Whole sequence top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 21
Satisfying E cutoff: 21
Total memory: 29K


Acknowledgements:

This research is funded by:

Developed by: