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Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

2 accessions found for Brucella abortus S19  

Data for CP000888  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HWE_HK.hmm [HWE_HK]
Sequence database: CP000888.Gprot.fsa
per-sequence score cutoff: >= 60.0 [TC1]
per-domain score cutoff: >= 60.0 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HWE_HK
Accession: PF07536.4
Description: HWE histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000888_0575 CDS_642703-641234 141.0 1.9e-48 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000888_0575 1/1 285 367 .. 1 85 [] 141.0 1.9e-48

Alignments of top-scoring domains:
CP000888_0575: domain 1 of 1, from 285 to 367: score 141.0, E = 1.9e-48
*->ELnHRVKNtLAvVQSiarQTlRnaasldefveaFsgRLqALsraHdL
E HR+KN++A+VQSi++QTlRn+ +++++++ Fs RL+ALs+aHd+
CP000888_0 285 EIAHRFKNSMAMVQSIVNQTLRNTYDPEQANRLFSERLRALSQAHDM 331

VpLtrseWagAdLreLleaeLaPyggedaeRitlsGPd<-*
L ++WagA++ ++++ +LaP+++ a Ri++sGP+
CP000888_0 332 --LLKENWAGATIQQICATALAPFNSTFANRIHMSGPH 367


Histogram of all scores:
score obs exp (one = represents 4 sequences)
----- --- ---
-15 3 0|=
-14 7 0|==
-13 18 0|=====
-12 80 0|====================
-11 100 8|=*=======================
-10 176 106|==========================*=================
-9 188 264|=============================================== *
-8 186 274|=============================================== *
-7 108 184|=========================== *
-6 66 100|================= *
-5 49 49|============*
-4 21 23|=====*
-3 17 10|==*==
-2 10 5|=*=
> -1 4 -|=


% Statistical details of theoretical EVD fit:
mu = -7.9989
lambda = 0.7843
chi-sq statistic = 1140.4348
P(chi-square) = 0

Total sequences searched: 1033

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: