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Classification of phyla is from NCBI page
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264 projects found  

2 accessions found for Coxiella burnetii RSA 331  

Data for CP000890  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000890.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000890_0742 CDS_752872-754881 94.2 1.1e-26 1
CP000890_0406 CDS_408139-407381 86.9 1.3e-24 1
CP000890_0660 CDS_662126-664018 76.4 1.2e-21 1
CP000890_1683 CDS_1782776-1780803 55.9 7.8e-16 1
CP000890_1180 CDS_1252709-1254145 55.2 1.3e-15 1
CP000890_0071 CDS_75291-76568 46.5 3.6e-13 1
CP000890_1009 CDS_1046003-1043577 41.4 1e-11 2

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000890_0742 1/1 291 356 .. 1 87 [] 94.2 1.1e-26
CP000890_0406 1/1 27 94 .. 1 87 [] 86.9 1.3e-24
CP000890_0660 1/1 257 322 .. 1 87 [] 76.4 1.2e-21
CP000890_1683 1/1 140 205 .. 1 87 [] 55.9 7.8e-16
CP000890_1180 1/1 253 318 .. 1 87 [] 55.2 1.3e-15
CP000890_0071 1/1 217 275 .. 1 87 [] 46.5 3.6e-13
CP000890_1009 1/2 269 293 .. 1 25 [. 35.6 4.5e-10

Alignments of top-scoring domains:
CP000890_0742: domain 1 of 1, from 291 to 356: score 94.2, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+fla++sHELRTPL+aI+g++++L++ ++ls+eq
CP000890_0 291 TKSDFLAMMSHELRTPLNAILGMSQILKT---------HNLSDEQ-- 326

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i ++++ ll+L+ndlLd++++eag
CP000890_0 327 ----------QGQIDVISQAGQNLLALLNDLLDFAKLEAG 356

CP000890_0406: domain 1 of 1, from 27 to 94: score 86.9, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s+f+an+sHELRTPLt+Irgy+e+Ll+ + ++++
CP000890_0 27 IRSDFVANVSHELRTPLTVIRGYLETLLK--------KEVRDSKS-- 63

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+++++ +++ + r++ +i+dlL lsr+e+
CP000890_0 64 ---------YQKIFQQMYQHSTRMETIIDDLLLLSRLESD 94

CP000890_0660: domain 1 of 1, from 257 to 322: score 76.4, E = 1.2e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksef+an+sH+LRTP+++I+g a++ + +e + +q
CP000890_0 257 AKSEFIANISHDLRTPINGILGIAQIFNM---------HEHTKKQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++ + +a+ ll L++d+Ld++r+e g
CP000890_0 293 ----------EPLINDLSASANLLLGLVEDILDFARLEVG 322

CP000890_1683: domain 1 of 1, from 140 to 205: score 55.9, E = 7.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+ H+LRTPLt+I++ ae L + +++ee+
CP000890_1 140 VKSEFLANMGHDLRTPLTGIILIAEYLWK----------KQTEEKD- 175

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ++ ++++ll+ in++L+++ eag
CP000890_1 176 ----------KQLSKDLILAGKQLLHFINEVLEITNVEAG 205

CP000890_1180: domain 1 of 1, from 253 to 318: score 55.2, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HELRTPL+a+ ++++++l+ ++++e+r
CP000890_1 253 REKRFTADAAHELRTPLAALNTHTQVALR----------AKTPEER- 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ++l ++r + +++lL+l r+ +
CP000890_1 289 ----------KEALLKVLAGVNRGTHVVQQLLTLNRMVPE 318

CP000890_0071: domain 1 of 1, from 217 to 275: score 46.5, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +++ a+ L +
CP000890_0 217 NRTQMLAAISHDLRTPITRMKLRAQFLDD------------------ 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++++ ++ +in+ L ++r +
CP000890_0 246 ----------STTRNALVKDLNEMEVMINETLSFARDDFA 275

CP000890_1009: domain 1 of 2, from 269 to 293: score 35.6, E = 4.5e-10
*->akseflanlsHELRTPLtaIrgyae<-*
aksef+an+sH++RTP+++++g+++
CP000890_1 269 AKSEFIANMSHDIRTPIAGMLGMLQ 293


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 4 0|=
-14 26 0|====
-13 74 1|*==========
-12 139 44|======*=============
-11 254 228|================================*====
-10 358 424|==================================================== *
-9 340 438|================================================= *
-8 273 328|======================================= *
-7 186 206|=========================== *
-6 100 119|=============== *
-5 64 65|=========*
-4 51 34|====*===
-3 20 18|==*
-2 17 9|=*=
-1 5 5|*
0 5 2|*
1 2 1|*
2 3 0|=
3 1 0|=
> 4 8 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 266.7982
P(chi-square) = 0

Total sequences searched: 1930

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: