Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

4 accessions found for Shewanella baltica OS195  

Data for CP000891  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000891.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000891_0865 CDS_1026422-1031782 105.0 2.2e-29 1
CP000891_3892 CDS_4616978-4613262 97.9 2.3e-27 1
CP000891_3271 CDS_3881028-3883829 91.6 1.5e-25 1
CP000891_2233 CDS_2672944-2670170 88.5 1.1e-24 1
CP000891_4313 CDS_5127292-5122403 82.2 6.6e-23 1
CP000891_1396 CDS_1682323-1683621 78.4 8e-22 1
CP000891_3334 CDS_3961544-3958482 77.2 1.7e-21 1
CP000891_0057 CDS_66369-65323 65.0 4.9e-18 1
CP000891_0267 CDS_307307-306261 59.3 2e-16 1
CP000891_3054 CDS_3644337-3643255 52.9 1.3e-14 1
CP000891_0260 CDS_300992-299628 52.2 2.1e-14 1
CP000891_1917 CDS_2298889-2300286 51.2 4e-14 1
CP000891_0629 CDS_757279-758715 51.1 4.2e-14 1
CP000891_1863 CDS_2242160-2239992 51.0 4.5e-14 1
CP000891_1097 CDS_1305537-1304269 50.7 5.7e-14 1
CP000891_0307 CDS_349604-351211 49.2 1.4e-13 1
CP000891_4315 CDS_5128446-5129735 48.5 2.3e-13 1
CP000891_3668 CDS_4353647-4352355 46.7 7.7e-13 1
CP000891_1781 CDS_2149030-2152470 46.6 7.9e-13 1
CP000891_4430 CDS_5266216-5264063 46.6 8.2e-13 1
CP000891_2332 CDS_2768442-2766523 45.0 2.3e-12 1
CP000891_3926 CDS_4652629-4650476 43.7 5.4e-12 1
CP000891_2936 CDS_3503558-3505354 39.2 1e-10 1
CP000891_3837 CDS_4547341-4545326 31.7 1.3e-08 1
CP000891_0295 CDS_334491-335747 29.7 4.9e-08 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000891_0865 1/1 1042 1107 .. 1 87 [] 105.0 2.2e-29
CP000891_3892 1/1 721 786 .. 1 87 [] 97.9 2.3e-27
CP000891_3271 1/1 298 363 .. 1 87 [] 91.6 1.5e-25
CP000891_2233 1/1 400 465 .. 1 87 [] 88.5 1.1e-24
CP000891_4313 1/1 899 964 .. 1 87 [] 82.2 6.6e-23
CP000891_1396 1/1 205 271 .. 1 87 [] 78.4 8e-22
CP000891_3334 1/1 509 574 .. 1 87 [] 77.2 1.7e-21
CP000891_0057 1/1 127 195 .. 1 87 [] 65.0 4.9e-18
CP000891_0267 1/1 126 191 .. 1 87 [] 59.3 2e-16
CP000891_3054 1/1 136 202 .. 1 87 [] 52.9 1.3e-14
CP000891_0260 1/1 240 302 .. 1 87 [] 52.2 2.1e-14
CP000891_1917 1/1 250 316 .. 1 87 [] 51.2 4e-14
CP000891_0629 1/1 260 323 .. 1 87 [] 51.1 4.2e-14
CP000891_1863 1/1 498 563 .. 1 87 [] 51.0 4.5e-14
CP000891_1097 1/1 200 269 .. 1 87 [] 50.7 5.7e-14
CP000891_0307 1/1 316 381 .. 1 87 [] 49.2 1.4e-13
CP000891_4315 1/1 224 284 .. 1 87 [] 48.5 2.3e-13
CP000891_3668 1/1 214 279 .. 1 87 [] 46.7 7.7e-13
CP000891_1781 1/1 786 852 .. 1 87 [] 46.6 7.9e-13
CP000891_4430 1/1 472 539 .. 1 87 [] 46.6 8.2e-13
CP000891_2332 1/1 269 335 .. 1 87 [] 45.0 2.3e-12
CP000891_3926 1/1 494 562 .. 1 87 [] 43.7 5.4e-12
CP000891_2936 1/1 376 444 .. 1 87 [] 39.2 1e-10
CP000891_3837 1/1 431 500 .. 1 87 [] 31.7 1.3e-08
CP000891_0295 1/1 208 272 .. 1 87 [] 29.7 4.9e-08

Alignments of top-scoring domains:
CP000891_0865: domain 1 of 1, from 1042 to 1107: score 105.0, E = 2.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++flan+sHE+RTP++aI+g+++l+l tel+ +q
CP000891_0 1042 AKGDFLANMSHEIRTPMNAIIGMSQLCLQ---------TELDKKQ-- 1077

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+e+i+r++++ll++ind+Ld+s+ieag
CP000891_0 1078 ----------KNYVEKIERASQSLLSIINDILDFSKIEAG 1107

CP000891_3892: domain 1 of 1, from 721 to 786: score 97.9, E = 2.3e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTP++aI+g+++l+++ t l+++q
CP000891_3 721 YKSEFLANMSHEIRTPMNAIIGMLQLAQR---------TSLTAQQ-- 756

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yle++ +a++llr+ind+Ld+s+ieag
CP000891_3 757 ----------KDYLEKAGFSAQSLLRIINDILDFSKIEAG 786

CP000891_3271: domain 1 of 1, from 298 to 363: score 91.6, E = 1.5e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++++g+a L + t+l + q
CP000891_3 298 IKSEFLANMSHELRTPLNGVIGFARQLVK---------TPLHSSQ-- 333

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++ti+r+a ll +ind+Ld+s++eag
CP000891_3 334 ----------VDYIKTIERSATNLLGIINDILDFSKLEAG 363

CP000891_2233: domain 1 of 1, from 400 to 465: score 88.5, E = 1.1e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+e l n+sHE+RTPL++I g++elL++ t l+++q
CP000891_2 400 RKTEHLTNISHEIRTPLNGITGALELLRN---------TQLTPKQ-- 435

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +t++++a++ll++in+lLd+sriea
CP000891_2 436 ----------MDLRDTAYNCANSLLAIINNLLDFSRIEAD 465

CP000891_4313: domain 1 of 1, from 899 to 964: score 82.2, E = 6.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks flan+sHE+RTP++a++g+++l++ t ls +q
CP000891_4 899 AKSAFLANMSHEIRTPMNAVLGMLQLIQY---------TSLSRQQ-- 934

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++ + +a++ll L+nd+Ld+s+i+ g
CP000891_4 935 ----------QDYVNKTQTAAKSLLGLLNDILDFSKIDVG 964

CP000891_1396: domain 1 of 1, from 205 to 271: score 78.4, E = 8e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ ef+an+sHEL+TPLt+++gy+e+++ + ++ +
CP000891_1 205 MRKEFVANVSHELKTPLTVLQGYLEMMQS---------MAEPDSMN- 241

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l ++++++r+++++++lL lsrie
CP000891_1 242 ----------VKPLALMQQQTRRMQSMVEQLLMLSRIEDA 271

CP000891_3334: domain 1 of 1, from 509 to 574: score 77.2, E = 1.7e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTPL++++g++ lL +el++ q
CP000891_3 509 AKSQFLATMSHEIRTPLNGLLGTLTLLGH---------SELPPAQ-- 544

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++ l+ +nd+Ld+sr+e+g
CP000891_3 545 ----------QQMLALSQYSGTLLQTVLNDILDFSRLEQG 574

CP000891_0057: domain 1 of 1, from 127 to 195: score 65.0, E = 4.9e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ l ++sH+LRTPL++I+g++ +L+e++ ++ls+ q+
CP000891_0 127 LRNSILLSVSHDLRTPLSTIIGTLTTLKEYM-------PKLSASQK- 165

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++++ e++rl + i++lL+ +++++g
CP000891_0 166 ----------TELIDSAAAESHRLHQYIENLLQATKLQHG 195

CP000891_0267: domain 1 of 1, from 126 to 191: score 59.3, E = 2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + +++nl+HE+++PL ++rg+a+lL + el+++ +
CP000891_0 126 AAQFLVRNLAHEIKNPLGGLRGAAQLLSR----------ELDDPAL- 161

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e++ i+++a+rl++L+++lL r +
CP000891_0 162 ----------KEFTTLIIEQADRLRNLVDRLLGPQRPTQH 191

CP000891_3054: domain 1 of 1, from 136 to 202: score 52.9, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++a+l+H+ RTPL+a ++ya+ L ++ls+ +
CP000891_3 136 ALGKMVATLAHQVRTPLSAALLYASNLAS---------PKLSDAAK- 172

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++ + ++ l+r++nd+L +++ ++
CP000891_3 173 ----------VKFQQKLVDRLNELERQVNDMLLMAKGRQD 202

CP000891_0260: domain 1 of 1, from 240 to 302: score 52.2, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++ ++sHELRTPLt +++ + l+++ + +++e+
CP000891_0 240 NQQRLMGDISHELRTPLTRLQLSLALARK--------KGQQTAET-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+i eae+l++Li++lL+lsr
CP000891_0 277 --------------ERIGYEAEQLEKLISELLELSRVKLS 302

CP000891_1917: domain 1 of 1, from 250 to 316: score 51.2, E = 4e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f a+++HEL+TPL++I+++ + L+ +++q+
CP000891_1 250 RERRFSADAAHELKTPLSVIKLHQHGLES---------LIDDDPQQ- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i+ + ++++ +++lL l+r ++
CP000891_1 287 ----------KFHLAAIDAGVVHMSHTVEQLLVLARVDSI 316

CP000891_0629: domain 1 of 1, from 260 to 323: score 51.1, E = 4.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ s+f+a+++HEL+TPLt++rg +e + +e ++
CP000891_0 260 QVSRFTADAAHELKTPLTVLRGKLEQAVL---------SENPS---- 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+ il+e+ +l+++ + lL ls++++g
CP000891_0 294 ----------QLDLNAILDEVGHLSAMTRKLLLLSQADSG 323

CP000891_1863: domain 1 of 1, from 498 to 563: score 51.0, E = 4.5e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + + lsHELRTP++++r +e L ++l+ ++
CP000891_1 498 YLENMSSRLSHELRTPVAVVRSSLEHLNL---------QTLDKDT-- 533

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y++++++ + rl+ ++n++ + +r+e+
CP000891_1 534 ----------QKYVDRAQEGVSRLSMILNNMSEATRLEQS 563

CP000891_1097: domain 1 of 1, from 200 to 269: score 50.7, E = 5.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++sHE+RTPL+ +++++ l+ ++ ++ s+eq++
CP000891_1 200 NQKHLSNAVSHEIRTPLARLKFALALMPMYC-------QPDSDEQKR 239

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l+ ++ +++ +++L+++lL+++ +e++
CP000891_1 240 ----------QDFLDEMQLDIKEMEDLLQELLTYASLESQ 269

CP000891_0307: domain 1 of 1, from 316 to 381: score 49.2, E = 1.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ ++sHELRTP++ I +++e+L++ +++ q
CP000891_0 316 SHKNLVNAVSHELRTPIARIEFNIEMLRN---------NTQDNNQ-- 351

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ +++ l++L++++L+ +r +++
CP000891_0 352 ----------LTQLDRIEFSLNELNSLVSEMLEHARFDSE 381

CP000891_4315: domain 1 of 1, from 224 to 284: score 48.5, E = 2.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++a++sH+LRTPLt Ir+++e++ e e+
CP000891_4 224 DRALLMAGISHDLRTPLTRIRLASEMMVE--------------ED-- 254

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + i +++e ++++i+++ + r +++
CP000891_4 255 ----------QYLKDGIVNDIEDMDAIISQFIAYIRQDQE 284

CP000891_3668: domain 1 of 1, from 214 to 279: score 46.7, E = 7.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++sH+L+TP++ +r+ +e+L+e ++se+ r
CP000891_3 214 DNKLLSRAVSHDLKTPIARLRFGIEALEE----------TQSEQLR- 249

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y++++ r+++ +++L+ lL ++r+++
CP000891_3 250 ----------VKYFQRLNRDLDTMEDLVMTLLSYARLDEA 279

CP000891_1781: domain 1 of 1, from 786 to 852: score 46.6, E = 7.9e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ks+fla++ H+L +PL+a r+++ L +++l+ e
CP000891_1 786 SKSRFLAAVGHDLMQPLNAARLFTASLSQ--------YPNLDREA-- 822

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ + ++++ +L+ dlLd+s++++g
CP000891_1 823 ----------RTTLSHVNSSLKIAGELLTDLLDISKLDSG 852

CP000891_4430: domain 1 of 1, from 472 to 539: score 46.6, E = 8.2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++a+++HE+++P ++I+g+ elL+ el ++ e
CP000891_4 472 ALGELTAGIAHEINNPTAVILGNMELLRYEL-------GDNAEVV-- 509

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ +++++ r++ +i+ lL++sr ++
CP000891_4 510 ----------KEEIDLVIQQVGRISTIIRSLLQYSRPGEF 539

CP000891_2332: domain 1 of 1, from 269 to 335: score 45.0, E = 2.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak l+++ HE+RTP++aI+gy+ +L++ +ls +q
CP000891_2 269 AKLAVLSSINHEIRTPINAILGYSRMLKK----------ALSQPQ-- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e ++++++ +a+ l + ++ L +s++eag
CP000891_2 304 --------ELDKIVDKMAWSANLLYSVAENTLNYSKAEAG 335

CP000891_3926: domain 1 of 1, from 494 to 562: score 43.7, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+ +sH+L+ PL +I +++ L e+l ++ + e +
CP000891_3 494 ELDRFAYIASHDLKSPLRGIEQLTSWLTEDL-------SDNTNENV- 532

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl i++ ++r+ L++ lL +sri+
CP000891_3 533 ----------QKYLGLIQSRIHRMVLLLDGLLMFSRIGRV 562

CP000891_2936: domain 1 of 1, from 376 to 444: score 39.2, E = 1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + a++ HEL++PL+a+r ya+ +++l ++ ++
CP000891_2 376 VIGSLSASINHELNQPLAALRSYAQNTQTFLA------RNMQDKA-- 414

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i++ ++rl +++ ++ ++r +g
CP000891_2 415 ----------LDNIKIIIELTDRLADIVGQFKSFTRKSQG 444

CP000891_3837: domain 1 of 1, from 431 to 500: score 31.7, E = 1.3e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+e+ a+lsHEL++PL+aI y++ ++ +l ++++ +ee
CP000891_3 431 IAGELGASLSHELNQPLAAIGHYCHGAEVRL-----QRGTSPEEL-- 470

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l i++e+ r +++i++l+ l + +
CP000891_3 471 ----------QSVLTLIQQEVTRADSIISRLRNLLKKRPV 500

CP000891_0295: domain 1 of 1, from 208 to 272: score 29.7, E = 4.9e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + + n++H+LRTPL+ Ir +e L ++e se
CP000891_0 208 AVRGATDNIAHDLRTPLSHIRIGLEELAS------KPSDEISEGC-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++++l+ + +L l+rie+g
CP000891_0 247 --------------AILTEELDHCLATFDAMLSLTRIEEG 272


Histogram of all scores:
score obs exp (one = represents 14 sequences)
----- --- ---
-15 2 0|=
-14 13 0|=
-13 57 3|*====
-12 193 102|=======*======
-11 457 533|================================= *
-10 746 989|====================================================== *
-9 812 1021|==========================================================*
-8 770 764|======================================================*
-7 574 482|==================================*======
-6 342 277|===================*=====
-5 201 152|==========*====
-4 135 81|=====*====
-3 67 43|===*=
-2 35 22|=*=
-1 28 11|*=
0 19 6|*=
1 6 3|*
2 4 1|*
3 1 0|=
4 2 0|=
> 5 35 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 345.5672
P(chi-square) = 0

Total sequences searched: 4499

Whole sequence top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 25
Satisfying E cutoff: 25
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: