Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000908  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000908.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000908_1752 CDS_1999618-2002995 95.3 1.4e-26 1
CP000908_4367 CDS_4925382-4923301 95.2 1.5e-26 1
CP000908_3466 CDS_3891405-3888607 93.8 3.6e-26 1
CP000908_4157 CDS_4692975-4695353 92.2 1.1e-25 1
CP000908_1641 CDS_1879549-1885362 89.4 6.3e-25 1
CP000908_0888 CDS_986344-984803 88.2 1.4e-24 1
CP000908_0529 CDS_592227-594587 86.3 4.7e-24 1
CP000908_2651 CDS_3005393-3006685 80.0 2.9e-22 1
CP000908_0683 CDS_760947-759001 76.5 2.9e-21 1
CP000908_1792 CDS_2043762-2042125 73.3 2.4e-20 1
CP000908_3339 CDS_3748310-3751525 71.4 8.3e-20 1
CP000908_1210 CDS_1367418-1365568 68.5 5.4e-19 1
CP000908_4371 CDS_4931324-4928784 67.2 1.2e-18 1
CP000908_0232 CDS_256332-259049 65.6 3.6e-18 1
CP000908_4048 CDS_4570926-4569163 56.6 1.3e-15 1
CP000908_3992 CDS_4509909-4507558 56.5 1.4e-15 1
CP000908_1896 CDS_2143504-2144868 53.5 9.8e-15 1
CP000908_2780 CDS_3157559-3158692 53.0 1.3e-14 1
CP000908_3718 CDS_4184258-4185718 52.4 2e-14 1
CP000908_3571 CDS_4001499-4003553 52.3 2.1e-14 1
CP000908_1301 CDS_1477696-1474202 48.0 3.6e-13 1
CP000908_0323 CDS_374557-373127 47.3 5.4e-13 1
CP000908_3098 CDS_3490656-3492257 46.1 1.2e-12 1
CP000908_1232 CDS_1396264-1394384 46.1 1.2e-12 1
CP000908_0018 CDS_20557-18512 45.9 1.4e-12 1
CP000908_2783 CDS_3162004-3164403 44.6 3.2e-12 1
CP000908_3463 CDS_3885999-3884461 43.4 6.8e-12 1
CP000908_2565 CDS_2922055-2919344 42.8 1e-11 1
CP000908_0778 CDS_862870-859673 42.5 1.2e-11 1
CP000908_3319 CDS_3725376-3727412 41.7 2.1e-11 1
CP000908_0122 CDS_130415-132493 41.3 2.8e-11 1
CP000908_0735 CDS_817292-818905 41.3 2.8e-11 1
CP000908_4199 CDS_4736842-4740102 41.0 3.3e-11 1
CP000908_3020 CDS_3402095-3403972 38.6 1.6e-10 1
CP000908_0430 CDS_486415-482738 37.7 2.8e-10 1
CP000908_1427 CDS_1630219-1626941 37.1 4.2e-10 1
CP000908_2803 CDS_3188767-3190635 36.9 4.9e-10 1
CP000908_1619 CDS_1842840-1844465 35.5 1.2e-09 1
CP000908_2526 CDS_2872284-2874824 35.3 1.4e-09 1
CP000908_0580 CDS_657069-658463 35.0 1.7e-09 1
CP000908_2083 CDS_2375020-2376915 34.8 1.8e-09 1
CP000908_2548 CDS_2900977-2899571 33.1 5.8e-09 1
CP000908_2802 CDS_3187037-3188770 28.6 1.1e-07 1
CP000908_0503 CDS_561288-562586 27.8 1.9e-07 1
CP000908_4109 CDS_4639470-4640777 27.5 2.3e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000908_1752 1/1 589 655 .. 1 87 [] 95.3 1.4e-26
CP000908_4367 1/1 170 235 .. 1 87 [] 95.2 1.5e-26
CP000908_3466 1/1 290 355 .. 1 87 [] 93.8 3.6e-26
CP000908_4157 1/1 276 344 .. 1 87 [] 92.2 1.1e-25
CP000908_1641 1/1 1247 1315 .. 1 87 [] 89.4 6.3e-25
CP000908_0888 1/1 257 326 .. 1 87 [] 88.2 1.4e-24
CP000908_0529 1/1 524 593 .. 1 87 [] 86.3 4.7e-24
CP000908_2651 1/1 184 251 .. 1 87 [] 80.0 2.9e-22
CP000908_0683 1/1 352 421 .. 1 87 [] 76.5 2.9e-21
CP000908_1792 1/1 298 368 .. 1 87 [] 73.3 2.4e-20
CP000908_3339 1/1 607 673 .. 1 87 [] 71.4 8.3e-20
CP000908_1210 1/1 366 431 .. 1 87 [] 68.5 5.4e-19
CP000908_4371 1/1 611 679 .. 1 87 [] 67.2 1.2e-18
CP000908_0232 1/1 672 740 .. 1 87 [] 65.6 3.6e-18
CP000908_4048 1/1 208 274 .. 1 87 [] 56.6 1.3e-15
CP000908_3992 1/1 409 475 .. 1 87 [] 56.5 1.4e-15
CP000908_1896 1/1 96 161 .. 1 87 [] 53.5 9.8e-15
CP000908_2780 1/1 139 203 .. 1 87 [] 53.0 1.3e-14
CP000908_3718 1/1 260 318 .. 1 87 [] 52.4 2e-14
CP000908_3571 1/1 311 377 .. 1 87 [] 52.3 2.1e-14
CP000908_1301 1/1 802 868 .. 1 87 [] 48.0 3.6e-13
CP000908_0323 1/1 250 316 .. 1 87 [] 47.3 5.4e-13
CP000908_3098 1/1 162 232 .. 1 87 [] 46.1 1.2e-12
CP000908_1232 1/1 382 450 .. 1 87 [] 46.1 1.2e-12
CP000908_0018 1/1 303 369 .. 1 87 [] 45.9 1.4e-12
CP000908_2783 1/1 518 589 .. 1 87 [] 44.6 3.2e-12
CP000908_3463 1/1 286 357 .. 1 87 [] 43.4 6.8e-12
CP000908_2565 1/1 489 555 .. 1 87 [] 42.8 1e-11
CP000908_0778 1/1 692 760 .. 1 87 [] 42.5 1.2e-11
CP000908_3319 1/1 304 370 .. 1 87 [] 41.7 2.1e-11
CP000908_0122 1/1 310 378 .. 1 87 [] 41.3 2.8e-11
CP000908_0735 1/1 155 223 .. 1 87 [] 41.3 2.8e-11
CP000908_4199 1/1 713 781 .. 1 87 [] 41.0 3.3e-11
CP000908_3020 1/1 387 455 .. 1 87 [] 38.6 1.6e-10
CP000908_0430 1/1 852 920 .. 1 87 [] 37.7 2.8e-10
CP000908_1427 1/1 719 787 .. 1 87 [] 37.1 4.2e-10
CP000908_2803 1/1 261 327 .. 1 87 [] 36.9 4.9e-10
CP000908_1619 1/1 163 233 .. 1 87 [] 35.5 1.2e-09
CP000908_2526 1/1 620 689 .. 1 87 [] 35.3 1.4e-09
CP000908_0580 1/1 209 277 .. 1 87 [] 35.0 1.7e-09
CP000908_2083 1/1 392 469 .. 1 87 [] 34.8 1.8e-09
CP000908_2548 1/1 265 323 .. 1 87 [] 33.1 5.8e-09
CP000908_2802 1/1 348 426 .. 1 87 [] 28.6 1.1e-07
CP000908_0503 1/1 228 286 .. 1 87 [] 27.8 1.9e-07
CP000908_4109 1/1 189 255 .. 1 87 [] 27.5 2.3e-07

Alignments of top-scoring domains:
CP000908_1752: domain 1 of 1, from 589 to 655: score 95.3, E = 1.4e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHE+RTPL++I+gya+lLl+ + + ++e+
CP000908_1 589 AKSEFLAAMSHEIRTPLNGILGYADLLLD--------RRDHDPED-- 625

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le i+ ++e+ll +nd+Ld s+ieag
CP000908_1 626 ----------QRRLELIRVSGESLLTVVNDVLDVSKIEAG 655

CP000908_4367: domain 1 of 1, from 170 to 235: score 95.2, E = 1.5e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL++I+g+a+lLl+ t l++eq
CP000908_4 170 AKSRFLATVSHELRTPLNGILGMADLLLD---------TRLDPEQ-- 205

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e + +++ ll L++ +Ld+srieag
CP000908_4 206 ----------RTYVEAFRTSGKALLGLVDGILDFSRIEAG 235

CP000908_3466: domain 1 of 1, from 290 to 355: score 93.8, E = 3.6e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP+++++ +aelL ++l++ q
CP000908_3 290 AKSVFLATMSHEIRTPMNGMLVMAELLAS---------ADLPPRQ-- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y ++i r++++ll++ind+Ld+++ eag
CP000908_3 326 ----------QRYAQVIARSGQSLLAIINDILDFAKVEAG 355

CP000908_4157: domain 1 of 1, from 276 to 344: score 92.2, E = 1.1e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHELRTPL+a++gy+e+L eel ++l+ ++
CP000908_4 276 AKSQFLANMSHELRTPLSAVIGYSEMLGEEL-------EDLGQAEL- 314

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+++a++ll Lind+Ld+s+ieag
CP000908_4 315 ----------LPDLRKIESSARHLLGLINDVLDISKIEAG 344

CP000908_1641: domain 1 of 1, from 1247 to 1315: score 89.4, E = 6.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks+flan+sHELRTPL++++ +++lL e +d++l+++q
CP000908_1 1247 YKSQFLANMSHELRTPLNSLLILSKLLSE------NRDGNLTDKQ-- 1285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ +ti ++ ll+Lind+Ldls+ie+g
CP000908_1 1286 ----------REFAKTINAAGTDLLSLINDILDLSKIESG 1315

CP000908_0888: domain 1 of 1, from 257 to 326: score 88.2, E = 1.4e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHELRTPL+aI+g++e++++e++ ++ ++
CP000908_0 257 AKSRFLATMSHELRTPLNAILGFSEVMKNEVF------GAHVAPA-- 295

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yrey i++++ +ll+Lin++Ldlsrieag
CP000908_0 296 ---------YREYATDIHDSGMHLLNLINEILDLSRIEAG 326

CP000908_0529: domain 1 of 1, from 524 to 593: score 86.3, E = 4.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
akseflan+sHELRTPL+aI+g+ael++ e++ + l+++
CP000908_0 524 AKSEFLANMSHELRTPLNAIMGFAELMESEVY------GSLGSPR-- 562

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++y + i++++ +ll+ i+d+L +sriea
CP000908_0 563 ---------YADYCRDIQQSGTYLLSVIDDILHMSRIEAK 593

CP000908_2651: domain 1 of 1, from 184 to 251: score 80.0, E = 2.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPL+a++g++e+L+ +++++ ++
CP000908_2 184 MRVDFVANASHELRTPLAALLGFIETLQG---------PARDDARAR 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +++ +a+r+ Li+dlL lsrie
CP000908_2 222 ----------EQFLGIMRTQAQRMTGLIDDLLSLSRIELH 251

CP000908_0683: domain 1 of 1, from 352 to 421: score 76.5, E = 2.9e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+ fla++sHELRTPL+aI+g++++L e+ ls+e
CP000908_0 352 VKTHFLATVSHELRTPLNAIIGFSDVLGGEGA------MSLSPERS- 391

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey +i +++++ll+ +n lLd+sri+ g
CP000908_0 392 ----------REYAGIIAQSGRHLLDVVNTLLDISRIRGG 421

CP000908_1792: domain 1 of 1, from 298 to 368: score 73.3, E = 2.4e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPLt+I+g ++l+++ ++e+ + +
CP000908_1 298 SRRRFFADVSHELRTPLTVILGECDLAQR--------SAERAAGRTV 336

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + ti++ a+rl r ++dlL +r e+g
CP000908_1 337 DY--------GPVFTTIRKRAQRLKRRVEDLLRVARSESG 368

CP000908_3339: domain 1 of 1, from 607 to 673: score 71.4, E = 8.3e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ + ++sHELRTPL+a++gya+lL+ d+ +e+
CP000908_3 607 AKSRYVVGISHELRTPLNAVLGYAQLLEG--------DPSIPEPR-- 643

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++i+r+a++l+ Li+ lLd+sr+eag
CP000908_3 644 ----------RNGIRVIRRSAQHLSGLIDGLLDISRMEAG 673

CP000908_1210: domain 1 of 1, from 366 to 431: score 68.5, E = 5.4e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + f+a++sHEL++PLt++r ++e+L ++++e r
CP000908_1 366 AIESFAADVSHELKNPLTSLRSAVETLPL----------AKTDESR- 401

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++i+++++rl+rLi+d+ d sr++a+
CP000908_1 402 ----------GRLMQIIQHDVKRLDRLISDISDASRLDAE 431

CP000908_4371: domain 1 of 1, from 611 to 679: score 67.2, E = 1.2e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++s ELR PLt I+g+++lL +e ++l+e q
CP000908_4 611 LRDTFVHHVSYELRSPLTNIIGFTQLLGDET------VGALNERQ-- 649

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey e i r++ ll +ind+Ldl+ i+ag
CP000908_4 650 ----------REYSEHIMRSSAALLVIINDILDLASIDAG 679

CP000908_0232: domain 1 of 1, from 672 to 740: score 65.6, E = 3.6e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l ++sH+LRTPL++++g+a++L++ d++l+ e +
CP000908_0 672 LARALLTSISHDLRTPLASVLGAASTLRD-------LDGALPVEAK- 710

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l ti++e+erl+r i +lLd++r+eag
CP000908_0 711 ----------AELLTTIIEESERLNRFIVNLLDMTRLEAG 740

CP000908_4048: domain 1 of 1, from 208 to 274: score 56.6, E = 1.3e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+ ++lL++ ++l ee r
CP000908_4 208 AVGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAEERR- 244

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ i + + r +L +lL ++r +a
CP000908_4 245 ----------RRYVDAISDTVARAAKLTGQLLAFARRQAL 274

CP000908_3992: domain 1 of 1, from 409 to 475: score 56.5, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir +e L++ ++l +e +
CP000908_3 409 AVGQLTGGVAHDFNNLLTIIRSSVEFLRR---------PDLAPERK- 445

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+yl+ + + ++r +L +lL ++r +a
CP000908_3 446 ----------RRYLDAVSDTVDRAAKLTGQLLAFARRQAL 475

CP000908_1896: domain 1 of 1, from 96 to 161: score 53.5, E = 9.8e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+ +++L + + ++e
CP000908_1 96 SKTRFLAAASHDLLQPLNAARLSLSALTD---------LAPGPEA-- 131

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + + ++r +e +++Li l d+s+++ag
CP000908_1 132 ----------QGIARQVERGLETIEDLIKALIDISKLDAG 161

CP000908_2780: domain 1 of 1, from 139 to 203: score 53.0, E = 1.3e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a+l+HE+++PL++Irg+a+lL+ e +ee+
CP000908_2 139 SMVALGAMLAHEIKNPLAGIRGAAQLLEQ----------ESDEED-- 173

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +++ i +e++r+ r+++++ + +
CP000908_2 174 ----------RLLTRLICDESDRIVRIVERMELFGDERPV 203

CP000908_3718: domain 1 of 1, from 260 to 318: score 52.4, E = 2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++la++sH+LRTP+t +r+ ae +++
CP000908_3 260 DRTQMLAAISHDLRTPITRLRLRAEFIED------------------ 288

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e lr++++++ L++ L + r ++g
CP000908_3 289 ----------ERAREMTLRDLDQMNGLVESALSYVRDGQG 318

CP000908_3571: domain 1 of 1, from 311 to 377: score 52.3, E = 2.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ Lt+I+ ++lL++ ++l e+ r
CP000908_3 311 VIGQLTGGVAHDFNNLLTVIKSSTDLLKR---------PDLAEDRR- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y+e i + ++r +L +lL ++r ++
CP000908_3 348 ----------TRYIEAISNTVDRAAKLTGQLLAFARRQTL 377

CP000908_1301: domain 1 of 1, from 802 to 868: score 48.0, E = 3.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +++H++++ Lt I+g +++L++ l+ e
CP000908_1 802 AMGQLTGGVAHDFNNLLTPIIGSLDMLQR---------KQLGNERE- 838

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ + ++aer L+++lL ++r +
CP000908_1 839 ----------QRLIAGAMQSAERAKTLVQRLLAFARRQPL 868

CP000908_0323: domain 1 of 1, from 250 to 316: score 47.3, E = 5.4e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e n++H+L+TPLt +r a+ +l+ t+ ++e++
CP000908_0 250 GMREVSDNIAHDLKTPLTRLRNRADEALR---------TAETPETL- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + e ++++++ l r n lL+++r+eag
CP000908_0 287 ----------RTAMEGVIEDSDGLIRVFNALLTIARLEAG 316

CP000908_3098: domain 1 of 1, from 162 to 232: score 46.1, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L +I+gya+ L ++ld +++++ +
CP000908_3 162 AIGRLTGGIAHDFNNLLQVILGYADSLATNLD-----RPDADRGRM- 202

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+++aer + L ++lL ++r +
CP000908_3 203 ----------GRAVGNIREAAERASTLTQQLLSFARKQRL 232

CP000908_1232: domain 1 of 1, from 382 to 450: score 46.1, E = 1.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++a++ HEL++PL+a+rg+a+ + ++l ++ + +e
CP000908_1 382 TLGQMAAGITHELNQPLAAMRGLADNASAFL------RQGREAEA-- 420

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l +i + ++rl ++ +l+ +sr
CP000908_1 421 ----------AANLTRIVSLVDRLGKITGQLRSFSRRSGT 450

CP000908_0018: domain 1 of 1, from 303 to 369: score 45.9, E = 1.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++++l+ ++++++
CP000908_0 303 AIGQLTGGVAHDFNNLLTVIVGGLDMMLR--------RPDQPDRV-- 339

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e + +a+r ++L ++lL +sr +
CP000908_0 340 ----------KRLAEAAMGAARRGEQLTQQLLAFSRRQML 369

CP000908_2783: domain 1 of 1, from 518 to 589: score 44.6, E = 3.2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a + ++ ++HE+++PLt I++ ae +++++ g +++++
CP000908_2 518 AWADVARRIAHEIKNPLTPIQLSAERIRRKY-----GKVITTDKDV- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ + ti r+++ + r+++++ ++r+ +
CP000908_2 559 ---------FEQCTATIVRQVDEIKRMVDEFSSFARMPKP 589

CP000908_3463: domain 1 of 1, from 286 to 357: score 43.4, E = 6.8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e++ +l+HEL++PL aI y+ +++ l ++ ++e+++
CP000908_3 286 AMGEMATTLAHELNQPLGAITNYTNGCRRLL-------AHPDPETIA 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +e l+++ ++a r +++i +l+++ ++
CP000908_3 326 RA--------QEVLDKAAEQALRARQIIARLREFVARGET 357

CP000908_2565: domain 1 of 1, from 489 to 555: score 42.8, E = 1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++ +++H++++ L aI+gy++lLl+ ++++ +++
CP000908_2 489 TVGQLAGGIAHDFNNVLQAIIGYSDLLLA---------SHRPTDHA- 525

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + i++ a+r +L+++lL +sr ++
CP000908_2 526 ----------FQDIMQIKQNANRAASLVRQLLAFSRRQTL 555

CP000908_0778: domain 1 of 1, from 692 to 760: score 42.5, E = 1.2e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g ++++++++ + +++
CP000908_0 692 AVGQLTGGIAHDFNNLLTGIVGSLDMMQTRVA------QGRTDTI-- 730

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y + + ++a+r +L +lL ++r +
CP000908_0 731 ----------EKYAKAAMSSANRAAALTHRLLAFARRQPL 760

CP000908_3319: domain 1 of 1, from 304 to 370: score 41.7, E = 2.1e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++g+++l+++ l+ + +l
CP000908_3 304 AIGQLTGGVAHDFNNLLAVVLGNLSLARK----------RLPNDPKL 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+++e +++aer +L ++L ++r ++
CP000908_3 341 ----------RQLIENSIQAAERGAALTKRMLAFARRQEL 370

CP000908_0122: domain 1 of 1, from 310 to 378: score 41.3, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++++ + + l++ +
CP000908_0 310 AVGQLTGGLAHDFNNLLAGISGSLELMQTRM-----QQGRLTDVD-- 349

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP000908_0 350 -----------RYMTAAQGAAKRAAALTHRLLAFSRRQTL 378

CP000908_0735: domain 1 of 1, from 155 to 223: score 41.3, E = 2.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++++ + + l++ +
CP000908_0 155 AVGQLTGGLAHDFNNLLAGISGSLELMQTRM-----QQGRLTDVD-- 194

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP000908_0 195 -----------RYMTAAQGAAKRAAALTHRLLAFSRRQTL 223

CP000908_4199: domain 1 of 1, from 713 to 781: score 41.0, E = 3.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ Lt+I g +elL+++l ++ r+
CP000908_4 713 AVGQLTGGLAHDFNNLLTGITGSLELLQTRL-----------AQGRI 748

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e +y++ ++ +a+r +L +lL +sr ++
CP000908_4 749 TEI-------DRYVNAAQGAAKRAAALTHRLLAFSRRQTL 781

CP000908_3020: domain 1 of 1, from 387 to 455: score 38.6, E = 1.6e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f+a+++HE+++PL+aIr ya+ + e++
CP000908_3 387 ALGQFAASMAHEINQPLAAIRSYADNTAILV-------RRGRVEDA- 425

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++ i r +er+ L ++l ++r +g
CP000908_3 426 ----------AENVSAIGRLTERIGTLTRQLKGFARRASG 455

CP000908_0430: domain 1 of 1, from 852 to 920: score 37.7, E = 2.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I+g ++l++++ ++ r+
CP000908_0 852 AVGQLTGGIAHDFNNLLTGIIGSLDLMQTRI-----------AQGRI 887

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ L ++y +l +a+r +L +lL ++r +
CP000908_0 888 DTL-------ERYAGAALTSAHRAASLTHRLLAFARRQPL 920

CP000908_1427: domain 1 of 1, from 719 to 787: score 37.1, E = 4.2e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +l+H++++ L++I+g +el+++ +++ + +
CP000908_1 719 AVGQLTGGLAHDFNNLLAGISGSLELMQT------RISQGRLKDV-- 757

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+y ++ +a+r +L +lL +sr ++
CP000908_1 758 ----------DRYMGAAQGAAKRAAALTHRLLAFSRRQTL 787

CP000908_2803: domain 1 of 1, from 261 to 327: score 36.9, E = 4.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++ ++ +++H++++ LtaI+g +el ++ + +
CP000908_2 261 ALGTLAGGIAHDFNNLLTAILGSLELVGP---------KIADQPRV- 297

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ + +a+r ++L +lL +sr
CP000908_2 298 ----------KRLVDNATGAAQRGSALTKRLLSFSRSNDA 327

CP000908_1619: domain 1 of 1, from 163 to 233: score 35.5, E = 1.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++ +++H++++ L +++g+ e++l+ l+ ++l+ +
CP000908_1 163 SLGQLTGGIAHDFNNLLQVVSGHNEVMLA-----LLDHPTLDVSRM- 203

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ e ++ +++r +L +lL +sr +
CP000908_1 204 ----------RRAGEAVRAATDRAAKLTHQLLAFSRKQRL 233

CP000908_2526: domain 1 of 1, from 620 to 689: score 35.3, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k la +s E+R L+aI+g+++++l + + + +++e +
CP000908_2 620 WKANALARVSREIRPSLNAILGLTDMMLSDRF------DRADAERL- 659

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl+ ++ ++ r+ Li+dl+dl+ i+ag
CP000908_2 660 ----------EAYLREVRLSGGRIAGLIDDLRDLAEIQAG 689

CP000908_0580: domain 1 of 1, from 209 to 277: score 35.0, E = 1.7e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ ++a+++HEL TPL +I++ a+ L ++l ++ ++ +
CP000908_0 209 QLDGLAAAAAHELGTPLGTIMLVAKELDRQL-------GPTASPAI- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l+ ++++++r++ +++ l + ++
CP000908_0 248 ----------AEDLSLLRDQVDRCRGILSKLTSMGEENEE 277

CP000908_2083: domain 1 of 1, from 392 to 469: score 34.8, E = 1.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkv.lagdtelseeqr
k+e l +++H+L++PL++I+g +e+L + + + +++s ++
CP000908_2 392 LKTEILGTIAHDLKNPLSVILGRSEMLAD----LiGLDQGDASGAEK 434

lpeLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +e i+ +a rl ++i+ l+ + +a
CP000908_2 435 AQAA------MLTQVEHIRASATRLIDMIDSLMADAMNDAL 469

CP000908_2548: domain 1 of 1, from 265 to 323: score 33.1, E = 5.8e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l ++sH+LRT +t ++ + l +
CP000908_2 265 QRTAMLNGVSHDLRTIITRFKLSLALVEQ------------------ 293

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e ++r+++ ++r+++ L ++r ++
CP000908_2 294 ----------TPEVEDLQRDVDEMSRMLEGYLAFARGDSA 323

CP000908_2802: domain 1 of 1, from 348 to 426: score 28.6, E = 1.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e++a+++HE+++PL+ I+++ + ++ l ++l++++ +
CP000908_2 348 SLGELVAGIAHEINNPLAFILAHQGTVERLL-------GDLPPPD-A 386

peLR.....ledpeyreyletilreaerllrLindlLdlsrieag<-*
pe+ + + r+ + +++ + r+++L+ +l+ +sr+++g
CP000908_2 387 PEGQralmkA-----RDRVGSMRLGLTRIQDLVLNLRKFSRLDEG 426

CP000908_0503: domain 1 of 1, from 228 to 286: score 27.8, E = 1.9e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + la++sH+L TP+t +r+ +e+ e ++eq
CP000908_0 228 ERVRILAAISHDLQTPITRMRLRVETGVE------------GPEQ-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++il ++e +++L+++ ++r +g
CP000908_0 261 --------------DRILGDLEAIEALVREGIAYARSVHG 286

CP000908_4109: domain 1 of 1, from 189 to 255: score 27.5, E = 2.3e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++++++++ +++l +e+s+ ++
CP000908_4 189 AIGQLTGGVAHDFNNLLNVVLLNLDRVERGL-------PEASPLRTR 228

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ + + aer + lL ++r +
CP000908_4 229 -------------LRDAVKGAERAATMTHKLLAFARRQPL 255


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 10 0|=
-13 55 3|*===
-12 217 110|======*======
-11 427 572|========================== *
-10 793 1061|=============================================== *
-9 951 1096|======================================================== *
-8 825 821|================================================*
-7 616 517|==============================*======
-6 373 297|=================*====
-5 218 163|=========*===
-4 132 87|=====*==
-3 65 46|==*=
-2 38 24|=*=
-1 27 12|*=
0 15 6|*
1 6 3|*
2 2 1|*
> 3 58 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 348.5757
P(chi-square) = 0

Total sequences searched: 4829

Whole sequence top hits:
tophits_s report:
Total hits: 45
Satisfying E cutoff: 45
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 45
Satisfying E cutoff: 45
Total memory: 39K


Acknowledgements:

This research is funded by:

Developed by: