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Thermotogae
Classification of phyla is from NCBI page
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106 projects found  

1 accessions found for Renibacterium salmoninarum ATCC 33209  

Data for CP000910  

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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000910.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000910_0048 CDS_48291-49937 89.9 3.3e-25 1
CP000910_0400 CDS_336729-337916 77.2 1.3e-21 1
CP000910_1617 CDS_1415124-1413400 72.7 2.6e-20 1
CP000910_0188 CDS_164674-163985 72.4 3.1e-20 1
CP000910_0675 CDS_572823-573953 71.3 6.2e-20 1
CP000910_0475 CDS_407726-406266 70.3 1.2e-19 1
CP000910_0899 CDS_777681-780359 66.1 1.8e-18 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000910_0048 1/1 327 393 .. 1 87 [] 89.9 3.3e-25
CP000910_0400 1/1 150 216 .. 1 87 [] 77.2 1.3e-21
CP000910_1617 1/1 309 376 .. 1 87 [] 72.7 2.6e-20
CP000910_0188 1/1 10 76 .. 1 87 [] 72.4 3.1e-20
CP000910_0675 1/1 153 217 .. 1 87 [] 71.3 6.2e-20
CP000910_0475 1/1 251 318 .. 1 87 [] 70.3 1.2e-19
CP000910_0899 1/1 652 720 .. 1 87 [] 66.1 1.8e-18

Alignments of top-scoring domains:
CP000910_0048: domain 1 of 1, from 327 to 393: score 89.9, E = 3.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++f+a++sHELRTPLtaIrgy+e++++ +els+
CP000910_0 327 KVRQFVADASHELRTPLTAIRGYTEMIKM--------TEELSASG-- 363

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l++++++++r+ ++++dlL+l+r+++g
CP000910_0 364 ----------EKSLSRVESQSKRMGAMVEDLLTLARLDEG 393

CP000910_0400: domain 1 of 1, from 150 to 216: score 77.2, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+an+sHEL+TP+ aI+++ae+L++ ++ +ee +
CP000910_0 150 IRNDFVANVSHELKTPVGAISLLAEALEA---------SPDDEEAV- 186

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ +++++e+ rl +L++d+ +lsr++
CP000910_0 187 ----------RRFAQRMHKESLRLAALVQDIIELSRLQGA 216

CP000910_1617: domain 1 of 1, from 309 to 376: score 72.7, E = 2.6e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f++++sHELRTPLt++r++ae+L + ++ ++
CP000910_1 309 MQRNFVSDVSHELRTPLTTVRMAAEVLYD-------ARESFDPVN-- 346

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ e +++++er ++L+ dlL++sr +ag
CP000910_1 347 ----------RRSAELMYHQVERFQALLADLLEISRFDAG 376

CP000910_0188: domain 1 of 1, from 10 to 76: score 72.4, E = 3.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++f+a++sHELRTPL+a+ + ae+L++ +++s ++
CP000910_0 10 RARRFVADVSHELRTPLAAMVASAEVLEN---------PAASRADA- 46

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+ + ++a+rl +L +dlL++sr +ag
CP000910_0 47 ----------REAARLTSSSARRLAKLTDDLLEISRFDAG 76

CP000910_0675: domain 1 of 1, from 153 to 217: score 71.3, E = 6.2e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+++ +sH+LRTPL+++++++e+L++ + ++
CP000910_0 153 ARRELVSWVSHDLRTPLASMKAMTEALED---------GVVTDVS-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y ++i+ +a+++ L+ndlL+ls+i++g
CP000910_0 189 -----------GYHRKIIAQADQMAVLVNDLLELSKIQSG 217

CP000910_0475: domain 1 of 1, from 251 to 318: score 70.3, E = 1.2e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+a++sHELRTPL +Irg++el + ++l ++
CP000910_0 251 RMRRFVADASHELRTPLVTIRGFSELYRH---------GALQGDE-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + +i++ea+r+ +L++dlL l+ri+++
CP000910_0 287 --------DVATAMGRIESEAKRMGALVEDLLVLARIDEQ 318

CP000910_0899: domain 1 of 1, from 652 to 720: score 66.1, E = 1.8e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ l+++sH+LRTPL+aI++ ++ L+ ++ ++e+
CP000910_0 652 MRTSILRAVSHDLRTPLAAIKLSVSSLRQDG-------VRFPPEDE- 690

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+l +++ +a+rl++L+ +lLd+sri +
CP000910_0 691 ----------AELLASVETSADRLDALVGNLLDMSRISSD 720


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 2 0|=
-14 18 0|==
-13 73 2|*=====
-12 220 80|======*==========
-11 416 415|===============================*
-10 725 771|======================================================== *
-9 593 796|============================================== *
-8 546 596|========================================== *
-7 383 375|============================*=
-6 237 216|================*==
-5 125 118|=========*
-4 82 63|====*==
-3 36 33|==*
-2 25 17|=*
-1 6 9|*
0 2 4|*
1 4 2|*
2 4 1|*
3 0 0|
4 1 0|=
5 0 0|
6 1 0|=
7 0 0|
> 8 8 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 315.2191
P(chi-square) = 0

Total sequences searched: 3507

Whole sequence top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 7
Satisfying E cutoff: 7
Total memory: 23K


Acknowledgements:

This research is funded by:

Developed by: