hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_2.hmm [HisKA_2]
Sequence database: CP000910.Gprot.fsa
per-sequence score cutoff: >= 32.2 [TC1]
per-domain score cutoff: >= 32.2 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_2
Accession: PF07568.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]
Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000910_1598 CDS_1392954-1391491 86.5 1.8e-24 1
Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000910_1598 1/1 293 354 .. 1 68 [. 86.5 1.8e-24
Alignments of top-scoring domains:
CP000910_1598: domain 1 of 1, from 293 to 354: score 86.5, E = 1.8e-24
*->EIHHRVKNNLQvISSLLrLQarkfkdeevikdEVleaLrEsqnRVlS
EIHHRVKNNLQ++++LLr+Q+r+ +ee + L+ + +RV++
CP000910_1 293 EIHHRVKNNLQTVAALLRMQSRRMHSEEG-----KHGLEQAMRRVAT 334
mAliHEeLYksedldtvdfse<-*
+Al+HE L+++ +vdf+e
CP000910_1 335 IALVHETLSQGLT-QNVDFDE 354
Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 9 0|=
-14 33 0|==
-13 112 21|=*=====
-12 284 230|=============*===
-11 982 641|=====================================*====================
-10 694 830|========================================= *
-9 508 701|============================== *
-8 344 470|===================== *
-7 226 279|============== *
-6 204 155|=========*==
-5 52 83|====*
-4 28 44|==*
-3 17 23|=*
-2 5 12|*
-1 5 6|*
0 1 3|*
1 1 1|*
2 0 0|
> 3 2 -|=
% Statistical details of theoretical EVD fit:
mu = -9.5227
lambda = 0.6548
chi-sq statistic = 721.5605
P(chi-square) = 0
Total sequences searched: 3507
Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K
Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K
