Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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Data for CP000915  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000915.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000915_1357 CDS_1813644-1810963 59.6 5.1e-17 1
CP000915_0131 CDS_171772-170345 57.0 2.8e-16 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000915_1357 1/1 664 732 .. 1 87 [] 59.6 5.1e-17
CP000915_0131 1/1 249 314 .. 1 87 [] 57.0 2.8e-16

Alignments of top-scoring domains:
CP000915_1357: domain 1 of 1, from 664 to 732: score 59.6, E = 5.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ ++ + + ++eq+
CP000915_1 664 LQKSMLSSVSHDLKTPLASIMGALSSIKSYK-------DSFNPEQQ- 702

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l+ +l e++rl++ i+++ ++ + ++g
CP000915_1 703 ----------VEMLDLALTESKRLDSYIDNIIQMLKVDSG 732

CP000915_0131: domain 1 of 1, from 249 to 314: score 57.0, E = 2.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + +++
CP000915_0 249 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDIDEI- 284

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
CP000915_0 285 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 314


Histogram of all scores:
score obs exp (one = represents 5 sequences)
----- --- ---
-14 2 0|=
-13 23 1|*====
-12 69 32|======*=======
-11 176 166|=================================*==
-10 262 309|===================================================== *
-9 277 319|======================================================== *
-8 218 239|============================================ *
-7 147 150|=============================*
-6 92 86|=================*=
-5 66 47|=========*====
-4 26 25|====*=
-3 15 13|==*
-2 7 7|=*
-1 9 3|*=
0 5 1|*
1 7 1|*=
2 2 0|=
> 3 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 65.2194
P(chi-square) = 3.68e-10

Total sequences searched: 1406

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: