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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
11 projects found  

1 accessions found for Thermotoga neapolitana DSM 4359  

Data for CP000916  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000916.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000916_0733 CDS_727143-728381 96.2 3.1e-27 1
CP000916_1722 CDS_1684929-1683508 89.8 2e-25 1
CP000916_1232 CDS_1195234-1193000 67.3 4.7e-19 1
CP000916_1315 CDS_1275179-1276138 49.8 4.2e-14 1
CP000916_0269 CDS_262642-261422 47.4 2e-13 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000916_0733 1/1 185 252 .. 1 87 [] 96.2 3.1e-27
CP000916_1722 1/1 238 306 .. 1 87 [] 89.8 2e-25
CP000916_1232 1/1 523 589 .. 1 87 [] 67.3 4.7e-19
CP000916_1315 1/1 106 171 .. 1 87 [] 49.8 4.2e-14
CP000916_0269 1/1 194 259 .. 1 87 [] 47.4 2e-13

Alignments of top-scoring domains:
CP000916_0733: domain 1 of 1, from 185 to 252: score 96.2, E = 3.1e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ef+a++sHELRTPLt+I gyae+Lle ++l +++
CP000916_0 185 MRREFIATVSHELRTPLTSIHGYAETLLE---------DDLENKEL- 221

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++l++i++e+ r+ +LindlLdl+++e+
CP000916_0 222 ---------VKRFLKIIEEESARMTHLINDLLDLEKMEES 252

CP000916_1722: domain 1 of 1, from 238 to 306: score 89.8, E = 2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef+an+sHELRTPLtaI++y+e++ + l +el+ +++
CP000916_1 238 MKTEFVANISHELRTPLTAIKAYTETMYNSL-------EELDTDTL- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e+le++l+++++l++L+n+lLd+sr+e
CP000916_1 277 ----------KEFLEVVLDQSNHLENLLNELLDFSRLERK 306

CP000916_1232: domain 1 of 1, from 523 to 589: score 67.3, E = 4.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++a ++HE+R+P+t I g+++ +++ + ++e++
CP000916_1 523 ILGEMTARVAHEIRNPITIIGGFVKRMRK---------HIDDPETL- 559

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y+++i e+ rl+ +++++L++s+ e+
CP000916_1 560 ----------KKYVDIITGELSRLEGIVREILEYSKEEQI 589

CP000916_1315: domain 1 of 1, from 106 to 171: score 49.8, E = 4.2e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +f+ ++sHEL TPL+a ++++ lL++ e+++e+
CP000916_1 106 AKLDFVMAVSHELFTPLSASKANLFLLKD---------LEKDPEK-- 141

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l++i+r++er++ +i++l l+ i+ g
CP000916_1 142 ----------LKILDRIDRSLERMETIIRQLKLLTMIQLG 171

CP000916_0269: domain 1 of 1, from 194 to 259: score 47.4, E = 2e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f ++sHEL+TPL+++++ +++L+ ++ +ee
CP000916_0 194 SLKRFSMDASHELKTPLSVLKTSLDVLKY---------QDVPEEV-- 229

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ l+++++ +e +++++++lL l + ++
CP000916_0 230 ----------KNKLSIMEKNVEKMRKQVEQLLLLVKSGEM 259


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 2 0|=
-14 3 0|=
-13 18 1|*==
-12 93 44|======*=======
-11 194 229|============================ *
-10 337 425|================================================= *
-9 377 439|====================================================== *
-8 314 329|============================================= *
-7 249 207|=============================*======
-6 124 119|================*=
-5 87 65|=========*===
-4 54 35|====*===
-3 40 18|==*===
-2 14 9|=*
-1 5 5|*
0 8 2|*=
1 1 1|*
2 5 0|=
3 1 0|=
4 1 0|=
5 1 0|=
6 2 0|=
7 0 0|
8 0 0|
> 9 7 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 139.9313
P(chi-square) = 1.682e-24

Total sequences searched: 1937

Whole sequence top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 5
Satisfying E cutoff: 5
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: