Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Caulobacter sp. K31  

Data for CP000927  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000927.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000927_2469 CDS_2698133-2697081 65.3 7.3e-19 1
CP000927_0617 CDS_690202-687161 43.6 1.8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000927_2469 1/1 155 217 .. 1 70 [] 65.3 7.3e-19
CP000927_0617 1/1 792 858 .. 1 70 [] 43.6 1.8e-12

Alignments of top-scoring domains:
CP000927_2469: domain 1 of 1, from 155 to 217: score 65.3, E = 7.3e-19
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpeearealdei
ER+RIARELHD+ +Q L+++kl+l++++ + +a++ e+
CP000927_2 155 ERRRIARELHDGTAQYLTGAKLMLGGLK-----VDG--RADKVRLEV 194

relarealaevRrllgdLRpaal<-*
++l+ al+e+R l +L+p+al
CP000927_2 195 EALLTNALEEIRSLSYVLHPPAL 217

CP000927_0617: domain 1 of 1, from 792 to 858: score 43.6, E = 1.8e-12
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIARELHD++ Q++ +++l l+ + ++ +p+++ar+ l++
CP000927_0 792 ERERIARELHDTLLQGIQGLMLRLQSVVDQI----PPDqRARQDLEQ 834

irelarealaevRrllgdLRpaal<-*
+ + a+ ++e R+ + LR +
CP000927_0 835 ALDRADSVIEEGRDRVKSLRADNP 858


Histogram of all scores:
score obs exp (one = represents 16 sequences)
----- --- ---
-14 6 0|=
-13 48 0|===
-12 99 56|===*===
-11 188 463|============ *
-10 593 1076|====================================== *
-9 914 1222|==========================================================*
-8 803 941|=================================================== *
-7 693 592|====================================*=======
-6 565 335|====================*===============
-5 499 179|===========*====================
-4 241 93|=====*==========
-3 177 48|==*=========
-2 77 24|=*===
-1 54 12|*===
0 38 6|*==
1 21 3|*=
2 15 1|*
3 8 0|=
4 7 0|=
5 6 0|=
6 2 0|=
7 0 0|
8 2 0|=
9 1 0|=
10 1 0|=
> 11 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 2231.4922
P(chi-square) = 0

Total sequences searched: 5061

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: