Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Caulobacter sp. K31  

Data for CP000928  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000928.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000928_0175 CDS_189263-187524 77.4 7.1e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000928_0175 1/1 210 275 .. 1 87 [] 77.4 7.1e-23

Alignments of top-scoring domains:
CP000928_0175: domain 1 of 1, from 210 to 275: score 77.4, E = 7.1e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHELRTP+++++g+a++L ++l++ q
CP000928_0 210 AKSSFLAMMSHELRTPMNGVLGMAHALTL---------SKLDSHQ-- 245

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+ +lr+++ l ++ndlLd+s+ieag
CP000928_0 246 ----------VSHLDMLLRSGQGLMTILNDLLDISKIEAG 275


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-13 2 0|==
-12 8 4|===*====
-11 14 25|============== *
-10 32 46|================================ *
-9 40 48|======================================== *
-8 44 36|===================================*========
-7 23 22|=====================*=
-6 22 13|============*=========
-5 9 7|======*==
-4 5 3|==*==
-3 3 2|=*=
-2 7 1|*======
> -1 3 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 19.2134
P(chi-square) = 0.003818

Total sequences searched: 212

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: