Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
132 projects found  

3 accessions found for Caulobacter sp. K31  

Data for CP000929  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000929.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000929_0001 CDS_1859-285 97.7 1e-28 1
CP000929_0025 CDS_27463-24254 85.9 2.2e-25 1
CP000929_0029 CDS_32643-29932 78.6 2.5e-23 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000929_0001 1/1 143 209 .. 1 87 [] 97.7 1e-28
CP000929_0025 1/1 697 763 .. 1 87 [] 85.9 2.2e-25
CP000929_0029 1/1 522 588 .. 1 87 [] 78.6 2.5e-23

Alignments of top-scoring domains:
CP000929_0001: domain 1 of 1, from 143 to 209: score 97.7, E = 1e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+kseflan+sHELRTPLtaI+g+aelL + ++ l +++
CP000929_0 143 SKSEFLANMSHELRTPLTAIIGFAELLAR--------EGSLAPQE-- 179

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l +i+++++ l +++nd+Ld+s++e+g
CP000929_0 180 ----------RHWLARIEDASKALHSIVNDVLDFSKLEEG 209

CP000929_0025: domain 1 of 1, from 697 to 763: score 85.9, E = 2.2e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPLta++g++ l++e +els+ +
CP000929_0 697 VKSEFLANMSHELRTPLTAVLGFSRLAEE--------QPELSDTT-- 733

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl+++ ++++ ll +nd+Ld+s++eag
CP000929_0 734 ----------RGYLKRACNAGQALLLTVNDILDFSKLEAG 763

CP000929_0029: domain 1 of 1, from 522 to 588: score 78.6, E = 2.5e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k eflan+sHELRTPLt+I+g+++l+ e ++l++ +
CP000929_0 522 VKAEFLANMSHELRTPLTSIIGFTSLAAE--------QSDLTDLT-- 558

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r y+e++ ++++ ll +nd+Ld+s++eag
CP000929_0 559 ----------RTYVERVGDASRALLCTVNDILDFSKLEAG 588


Histogram of all scores:
score obs exp (one = represents 1 sequences)
----- --- ---
-12 5 3|==*==
-11 15 19|=============== *
-10 25 36|========================= *
-9 33 37|================================= *
-8 37 28|===========================*=========
-7 15 17|=============== *
-6 13 10|=========*===
-5 7 5|====*==
-4 7 2|=*=====
-3 2 1|*=
-2 1 0|=
> -1 5 -|=====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 9.5100
P(chi-square) = 0.1469

Total sequences searched: 165

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: