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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Cellvibrio japonicus Ueda107  

Data for CP000934  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000934.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000934_0359 CDS_451161-453572 104.2 3.2e-29 1
CP000934_2399 CDS_2817192-2814442 100.5 3.6e-28 1
CP000934_3583 CDS_4378925-4382707 95.3 1.1e-26 1
CP000934_2515 CDS_3016402-3019326 94.6 1.7e-26 1
CP000934_1161 CDS_1398244-1401429 88.8 7.3e-25 1
CP000934_1424 CDS_1691666-1693672 87.7 1.5e-24 1
CP000934_1849 CDS_2210691-2206993 87.2 2e-24 1
CP000934_0253 CDS_323562-325541 86.8 2.7e-24 1
CP000934_0926 CDS_1122713-1119282 82.6 4.1e-23 2
CP000934_0739 CDS_882698-884974 79.1 4.1e-22 1
CP000934_0149 CDS_203390-202110 78.1 7.9e-22 1
CP000934_3290 CDS_4029011-4025046 77.4 1.3e-21 1
CP000934_3289 CDS_4024932-4022647 77.1 1.5e-21 1
CP000934_1807 CDS_2122353-2120818 69.1 2.8e-19 1
CP000934_3139 CDS_3826810-3828480 68.3 4.9e-19 1
CP000934_1372 CDS_1642773-1644200 63.1 1.4e-17 1
CP000934_3466 CDS_4225552-4226628 56.8 8.8e-16 1
CP000934_2779 CDS_3327245-3328663 53.6 7.1e-15 1
CP000934_1663 CDS_1967438-1968718 48.9 1.5e-13 1
CP000934_0038 CDS_61725-63020 47.7 3.3e-13 1
CP000934_3440 CDS_4201520-4200105 45.0 1.9e-12 1
CP000934_2382 CDS_2789506-2790984 44.1 3.4e-12 1
CP000934_0390 CDS_491008-488039 38.5 1.3e-10 1
CP000934_2124 CDS_2518178-2519722 38.3 1.5e-10 1
CP000934_2495 CDS_2989977-2992271 37.0 3.4e-10 1
CP000934_1754 CDS_2062673-2061270 34.8 1.4e-09 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000934_0359 1/1 277 342 .. 1 87 [] 104.2 3.2e-29
CP000934_2399 1/1 257 322 .. 1 87 [] 100.5 3.6e-28
CP000934_3583 1/1 809 875 .. 1 87 [] 95.3 1.1e-26
CP000934_2515 1/1 312 377 .. 1 87 [] 94.6 1.7e-26
CP000934_1161 1/1 519 584 .. 1 87 [] 88.8 7.3e-25
CP000934_1424 1/1 296 362 .. 1 87 [] 87.7 1.5e-24
CP000934_1849 1/1 677 742 .. 1 87 [] 87.2 2e-24
CP000934_0253 1/1 134 199 .. 1 87 [] 86.8 2.7e-24
CP000934_0926 1/2 675 741 .. 1 87 [] 82.0 6.3e-23
CP000934_0739 1/1 401 469 .. 1 87 [] 79.1 4.1e-22
CP000934_0149 1/1 201 266 .. 1 87 [] 78.1 7.9e-22
CP000934_3290 1/1 939 1007 .. 1 87 [] 77.4 1.3e-21
CP000934_3289 1/1 523 591 .. 1 87 [] 77.1 1.5e-21
CP000934_1807 1/1 269 337 .. 1 87 [] 69.1 2.8e-19
CP000934_3139 1/1 318 384 .. 1 87 [] 68.3 4.9e-19
CP000934_1372 1/1 257 322 .. 1 87 [] 63.1 1.4e-17
CP000934_3466 1/1 129 186 .. 1 79 [. 56.8 8.8e-16
CP000934_2779 1/1 249 313 .. 1 87 [] 53.6 7.1e-15
CP000934_1663 1/1 195 261 .. 1 87 [] 48.9 1.5e-13
CP000934_0038 1/1 203 263 .. 1 82 [. 47.7 3.3e-13
CP000934_3440 1/1 226 289 .. 1 87 [] 45.0 1.9e-12
CP000934_2382 1/1 265 333 .. 1 87 [] 44.1 3.4e-12
CP000934_0390 1/1 761 827 .. 1 87 [] 38.5 1.3e-10
CP000934_2124 1/1 252 342 .. 1 87 [] 38.3 1.5e-10
CP000934_2495 1/1 533 601 .. 1 87 [] 37.0 3.4e-10
CP000934_1754 1/1 242 300 .. 1 81 [. 34.8 1.4e-09

Alignments of top-scoring domains:
CP000934_0359: domain 1 of 1, from 277 to 342: score 104.2, E = 3.2e-29
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla++sHE+RTP+++++g++++L++ t+l+e q
CP000934_0 277 AKSQFLATMSHEIRTPMNGVIGMLDMLRD---------TPLDENQ-- 312

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y+++i+r++e ll++ind+Ld+s+ieag
CP000934_0 313 ----------KHYIDVIHRSGETLLSIINDILDYSKIEAG 342

CP000934_2399: domain 1 of 1, from 257 to 322: score 100.5, E = 3.6e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+fla +sHE+RTPL++I+g++ lLle tel+++q
CP000934_2 257 AKSQFLAVMSHEIRTPLNGILGMTNLLLE---------TELTPKQ-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ ++++r++e ll +ind+Ld+s+ eag
CP000934_2 293 ----------KRFARVARRSGEDLLLIINDILDFSKVEAG 322

CP000934_3583: domain 1 of 1, from 809 to 875: score 95.3, E = 1.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL+a++gy++lL + d+ l q
CP000934_3 809 AKSRFLANMSHEIRTPLNAVLGYTQLLMR--------DPQLAGNQ-- 845

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ il++++rll Lind+Ldls+ie+g
CP000934_3 846 ----------RERLQLILNASQRLLGLINDVLDLSKIESG 875

CP000934_2515: domain 1 of 1, from 312 to 377: score 94.6, E = 1.7e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan sHE+RTPL++I+g++ l+l+ tel+e+q
CP000934_2 312 VKSEFLANTSHEIRTPLNGILGFINLALK---------TELNEKQ-- 347

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
rey eti+++a+ ll in +Ld+s+ie+g
CP000934_2 348 ----------REYMETIRDSAQNLLTVINGILDFSKIESG 377

CP000934_1161: domain 1 of 1, from 519 to 584: score 88.8, E = 7.3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak +flan+sHE+RTPL+aI+g+a+++l+ e+++
CP000934_1 519 AKADFLANMSHEIRTPLNAIIGLAHVALA---------MEMNPNL-- 554

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r yl++++ ++e+ll+ ind+L +sr+eag
CP000934_1 555 ----------RNYLQKMRASGEHLLEVINDILNFSRLEAG 584

CP000934_1424: domain 1 of 1, from 296 to 362: score 87.7, E = 1.5e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fl+++sHELRTPL+aI+gy++l + d++ls eq
CP000934_1 296 AKSAFLSSMSHELRTPLNAILGYTQLFEY--------DGNLSREQ-- 332

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ i++++e+ll+Lind+Ldl++ie+g
CP000934_1 333 ----------VTNIREIRKAGEHLLQLINDVLDLAKIESG 362

CP000934_1849: domain 1 of 1, from 677 to 742: score 87.2, E = 2e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak+ flan+sHE+RTP++aI+g++elLl+ ++l++ q
CP000934_1 677 AKGMFLANMSHEIRTPMNAIIGFTELLLD---------SALDPVQ-- 712

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +t++++a++ll L+nd+Ld +++e g
CP000934_1 713 ----------LKHMQTVRQSARSLLGLLNDILDTAKLERG 742

CP000934_0253: domain 1 of 1, from 134 to 199: score 86.8, E = 2.7e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ksefla +sHE+RTP++aI+g l+++ t+l+e+q
CP000934_0 134 TKSEFLARISHEIRTPMNAIIGIGYLMQD---------TPLDEQQ-- 169

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ yl +i ++a++ll++in+lLd+s+ieag
CP000934_0 170 ----------QSYLTSINSAADSLLQIINQLLDFSKIEAG 199

CP000934_0926: domain 1 of 2, from 675 to 741: score 82.0, E = 6.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+ l ++sHELR PL+a++gya+lL++ d+ +++
CP000934_0 675 AKSRYLTGISHELRSPLNAVLGYAQLLEM--------DPSMPAHR-- 711

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+l +i+r++e+l +Li+ lLd+s+ieag
CP000934_0 712 ----------REALGVIRRSGEHLADLIEGLLDISKIEAG 741

CP000934_0739: domain 1 of 1, from 401 to 469: score 79.1, E = 4.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefl+ +sHELRTPL aI+gy+el eel +l++++r
CP000934_0 401 AKSEFLSLMSHELRTPLQAIIGYTELVIEEL--------KLDSDDRH 439

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ le++++ +erllrLin +Ld+++ie+g
CP000934_0 440 ----------VKDLERVIHNGERLLRLINGVLDMAKIESG 469

CP000934_0149: domain 1 of 1, from 201 to 266: score 78.1, E = 7.9e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f+an+sHELRTPLt+I gy+e+L + + + +
CP000934_0 201 MRQDFVANVSHELRTPLTVINGYVETLAD----------NNTTPA-- 235

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + l+ +l++a+r++ LindlL ls++e+
CP000934_0 236 ---------WDKPLQQMLQQAKRMSLLINDLLVLSKLETT 266

CP000934_3290: domain 1 of 1, from 939 to 1007: score 77.4, E = 1.3e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k ef++++sHELRTPLtaI+g++ +L + +g ++l+e
CP000934_3 939 MKAEFISTVSHELRTPLTAISGALGILTA------GGAGTLPEAA-- 977

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+++++ a rl +L+ndlLd++++ ag
CP000934_3 978 ----------TRMLQIAHNNALRLIHLVNDLLDMEKLVAG 1007

CP000934_3289: domain 1 of 1, from 523 to 591: score 77.1, E = 1.5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k+ef++++sHELRTPLt+I+g + l+l+++ +e +
CP000934_3 523 MKNEFVSAVSHELRTPLTSISGSLGLILNGM------LGEVPVRA-- 561

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l ++++ a rl +LindlLd++++ ag
CP000934_3 562 ----------RDMLVIAHKNALRLAHLINDLLDMEKLAAG 591

CP000934_1807: domain 1 of 1, from 269 to 337: score 69.1, E = 2.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +l+++sH++RTPLt+++g++++ le + + ls++q+
CP000934_1 269 LRSALLSSVSHDFRTPLTSMIGATSTVLELG-------EQLSPPQI- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+l t+l+ea+rl+r i++lLd++r++ g
CP000934_1 308 ----------NELLTTVLEEAQRLNRYIQNLLDMTRLGFG 337

CP000934_3139: domain 1 of 1, from 318 to 384: score 68.3, E = 4.9e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+++HE+R+PL aI+ +++lL e +++l++ +
CP000934_3 318 SLGRLTASIAHEIRNPLGAISHASQLLTE--------SPNLDAGD-- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +i + ++r +++i+++L+lsr +
CP000934_3 355 ----------QRLLGIINSHSKRVNQIIENILQLSRRRPA 384

CP000934_1372: domain 1 of 1, from 257 to 322: score 63.1, E = 1.4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + +l HEL+ PL++Ir++aelL+ + ++
CP000934_1 257 YVEHYVQTLTHELKSPLAGIRAAAELLQS---------PMGDARR-- 292

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ti+re+ rl+rLi++lL l+ e++
CP000934_1 293 ----------QQFIHTIDRESLRLQRLIERLLNLAMVEQQ 322

CP000934_3466: domain 1 of 1, from 129 to 186: score 56.8, E = 8.8e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++++HE+++PL +Irg+a+lL + el+ +
CP000934_3 129 TTRNLIRGMAHEIKNPLGGIRGAAQLLAR----------ELPHSNL- 164

peLRledpeyreyletilreaerllrLindlL<-*
ey+++i++ea+rl++L++++L
CP000934_3 165 ----------TEYTSIIIDEADRLRNLVDRML 186

CP000934_2779: domain 1 of 1, from 249 to 313: score 53.6, E = 7.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +++a++sHELRTPL+++++ +e+L++++ + +++
CP000934_2 249 TRKRWVADISHELRTPLAVLQADLEALEDGV-------RHFDAKA-- 286

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l ++++ a rl +L+ndl +ls + g
CP000934_2 287 -------------LARLQKHAARLTHLVNDLYELSLTDIG 313

CP000934_1663: domain 1 of 1, from 195 to 261: score 48.9, E = 1.5e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +l+H++RTPL+a ++y+ L ++l++ r
CP000934_1 195 ALGKMMGALAHQIRTPLSAAILYTGHLCS---------GKLDDGRR- 231

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e+il ++ ++r+++d+L + + e +
CP000934_1 232 ----------QQFSEKILGRLNNIERQVQDMLFYVKGELP 261

CP000934_0038: domain 1 of 1, from 203 to 263: score 47.7, E = 3.3e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +e++ ++sHELRTPL+ +++++ +L+ ++l+e+
CP000934_0 203 SHREMTNAVSHELRTPLARMKFALAMLES---------QPLDEKS-- 238

peLRledpeyreyletilreaerllrLindlLdls<-*
++ + i ++ +++Li+ lL ++
CP000934_0 239 ----------QRQCRNIATDVAEMESLISTLLMYA 263

CP000934_3440: domain 1 of 1, from 226 to 289: score 45.0, E = 1.9e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f a+++HELRTP++ +r ++e L el +
CP000934_3 226 REKRFSADAAHELRTPIAILRIHCENLMQ----------ELQPAP-- 260

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e l+ ++ +er++ L++++L l r
CP000934_3 261 -----------ESLRNLQAGIERMSYLVEQILLLNRTTPD 289

CP000934_2382: domain 1 of 1, from 265 to 333: score 44.1, E = 3.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ef+ +sH+L+ PL +I ++e L e+l ++ +e +
CP000934_2 265 HMEEFTYVASHDLKSPLRGIADLVEWLSEDL-------PTGLSESI- 303

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +++i+ ++r+++L++dlL ++r++
CP000934_2 304 ----------YKNIDRIKLRIDRMEKLVDDLLLYARAGKR 333

CP000934_0390: domain 1 of 1, from 761 to 827: score 38.5, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+ + + +
CP000934_0 761 SVGRLAAGVAHEIGNPITGIACLAQNLRY---------EVEEPGAV- 797

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ e il++++r +r+++ l +s +++
CP000934_0 798 ----------LDTAEQILSQTDRVSRIVQSLVSYSHAGHA 827

CP000934_2124: domain 1 of 1, from 252 to 342: score 38.3, E = 1.5e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldk.....v.lagdtel
+++e +a+++HE+++PL++I+ +++ + ++ld + ++++ a+ +l
CP000934_2 252 SLGEVAAGIAHEINNPLSVILQNVQNITRRLDPhfagnQkEAQTLAL 298

seeqrlpeLR...ledpeyreyletilreaerllrLindlLdlsrieag<
+ +q+ +LR+++ ++l+ i++++er +++ +L +s ++
CP000934_2 299 DLQQVDQYLRqrdI-----YQFLQYIREAGERSANIVTTMLAFSHQGQK 342

-*

CP000934_2 - -

CP000934_2495: domain 1 of 1, from 533 to 601: score 37.0, E = 3.4e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f+ +sH+L+ PL +I +++ ++e+l + +ee
CP000934_2 533 ELETFAYVASHDLKSPLRGIAQLSSWIEEDLA------GGETEEV-- 571

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++ +++ + r+++L++dlL + r++
CP000934_2 572 ----------NKHTRMMRNRIARMEKLLDDLLVFYRAGKT 601

CP000934_1754: domain 1 of 1, from 242 to 300: score 34.8, E = 1.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +++ ++sHELR PL+ ++ ++ l++ ++ ++ ++e
CP000934_1 242 EQKRLIKDVSHELRSPLARLQIALALAQQRS------RGMIDAEL-- 280

peLRledpeyreyletilreaerllrLindlLdl<-*
+i+++a++l+++i d+L+l
CP000934_1 281 --------------ARIKQAADYLNDIITDILTL 300


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 6 0|=
-14 33 0|===
-13 79 2|*======
-12 170 85|======*=======
-11 338 445|========================== *
-10 520 825|======================================== *
-9 723 852|======================================================== *
-8 652 638|=================================================*=
-7 511 402|==============================*=========
-6 301 231|=================*======
-5 170 127|=========*====
-4 94 67|=====*==
-3 45 35|==*=
-2 35 18|=*=
-1 19 9|*=
0 12 5|*
1 9 2|*
2 1 1|*
3 2 0|=
4 1 0|=
5 1 0|=
6 0 0|
7 1 0|=
8 0 0|
9 0 0|
10 2 0|=
11 0 0|
> 12 29 -|===


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 350.0654
P(chi-square) = 0

Total sequences searched: 3754

Whole sequence top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 26
Satisfying E cutoff: 26
Total memory: 31K


Acknowledgements:

This research is funded by:

Developed by: