Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

1 accessions found for Cellvibrio japonicus Ueda107  

Data for CP000934  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000934.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000934_1060 CDS_1282486-1281386 82.3 5.5e-24 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000934_1060 1/1 177 245 .. 1 70 [] 82.3 5.5e-24

Alignments of top-scoring domains:
CP000934_1060: domain 1 of 1, from 177 to 245: score 82.3, E = 5.5e-24
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe.earealde
ER+RIAR+LHD +g++Ls+i+l++ela++ll + +++a+++l e
CP000934_1 177 ERERIARDLHDILGHTLSSIALKAELAEKLL--KQSKQeQAEQHLSE 221

irelarealaevRrllgdLRpaal<-*
++++ar +l+ vR++++++++ +l
CP000934_1 222 LHQIARNSLSLVRQTVSGYKHRGL 245


Histogram of all scores:
score obs exp (one = represents 13 sequences)
----- --- ---
-15 1 0|=
-14 57 0|=====
-13 105 0|=========
-12 129 41|===*======
-11 202 344|================ *
-10 524 798|========================================= *
-9 727 906|======================================================== *
-8 555 698|=========================================== *
-7 472 439|=================================*===
-6 336 248|===================*======
-5 278 133|==========*===========
-4 153 69|=====*======
-3 89 35|==*====
-2 51 18|=*==
-1 29 9|*==
0 17 4|*=
1 10 2|*
2 4 1|*
3 11 0|=
4 1 0|=
5 0 0|
6 0 0|
> 7 3 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 868.0211
P(chi-square) = 0

Total sequences searched: 3754

Whole sequence top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 1
Satisfying E cutoff: 1
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: