Acidobacteria Actinobacteria Alphaproteobacteria
Aquificae Bacteroidetes/Chlorobi Betaproteobacteria
Chlamydiae/Verrucomicrobia Chloroflexi Cyanobacteria
Deinococcus-Thermus Deltaproteobacteria Epsilonproteobacteria
Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
Search:
264 projects found  

2 accessions found for Francisella philomiragia subsp. philomiragia ATCC 25017  

Data for CP000937  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000937.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000937_0887 CDS_950108-952798 55.5 1.1e-15 1
CP000937_1002 CDS_1080971-1079526 55.0 1.4e-15 1
CP000937_1222 CDS_1330825-1329788 41.8 8e-12 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000937_0887 1/1 665 733 .. 1 87 [] 55.5 1.1e-15
CP000937_1002 1/1 256 321 .. 1 87 [] 55.0 1.4e-15
CP000937_1222 1/1 131 192 .. 1 87 [] 41.8 8e-12

Alignments of top-scoring domains:
CP000937_0887: domain 1 of 1, from 665 to 733: score 55.5, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +l+++sH+L+TPL++I+g+++ + + + eq+
CP000937_0 665 LQKSMLSSVSHDLKTPLASIMGALSSVKS-------FKESFTQEQQ- 703

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+++ +l e++rl++ i+++ ++ + ++g
CP000937_0 704 ----------DEMIDLALTESKRLDNYIDNIIQMLKVDSG 733

CP000937_1002: domain 1 of 1, from 256 to 321: score 55.0, E = 1.4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f +++HEL+TP++++++++e++l+ + ++
CP000937_1 256 REKRFSGDAAHELKTPIAGVKTLVEIALA----------SDDINEI- 291

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ le+i+++++r +++i++lL+lsri+ +
CP000937_1 292 ----------KQKLERIKSSTNRYSHIIDQLLTLSRIQPN 321

CP000937_1222: domain 1 of 1, from 131 to 192: score 41.8, E = 8e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
n++H+L+TPLt ++ +e L+ t ++++
CP000937_1 131 DIKSVSNNIAHDLKTPLTRLKNKLESLEQ---------TCPNDDT-- 166

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+l e ++ll++ n +L l r+e+g
CP000937_1 167 --------------AEALAECNQLLDIFNSILRLNRLEHG 192


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-14 5 0|=
-13 26 1|*===
-12 108 43|======*=========
-11 208 226|============================== *
-10 337 420|================================================= *
-9 357 433|=================================================== *
-8 369 324|==============================================*======
-7 218 204|=============================*==
-6 127 117|================*==
-5 71 64|=========*=
-4 39 34|====*=
-3 15 18|==*
-2 11 9|=*
-1 9 5|*=
0 5 2|*
> 1 6 -|=


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 139.0842
P(chi-square) = 2.501e-24

Total sequences searched: 1911

Whole sequence top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 3
Satisfying E cutoff: 3
Total memory: 22K


Acknowledgements:

This research is funded by:

Developed by: