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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Xylella fastidiosa M12  

Data for CP000941  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000941.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000941_0416 CDS_508371-510524 96.4 2.9e-27 1
CP000941_0632 CDS_736148-739687 78.7 3.1e-22 1
CP000941_1911 CDS_2206387-2207724 74.4 5e-21 1
CP000941_1921 CDS_2219206-2217596 68.3 2.7e-19 1
CP000941_1813 CDS_2081915-2080239 58.0 2.2e-16 1
CP000941_1018 CDS_1198787-1199836 53.6 4e-15 1
CP000941_0256 CDS_334344-335717 40.3 2.3e-11 1
CP000941_0260 CDS_339636-337999 39.2 4.8e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000941_0416 1/1 189 254 .. 1 87 [] 96.4 2.9e-27
CP000941_0632 1/1 782 847 .. 1 87 [] 78.7 3.1e-22
CP000941_1911 1/1 236 302 .. 1 87 [] 74.4 5e-21
CP000941_1921 1/1 314 380 .. 1 87 [] 68.3 2.7e-19
CP000941_1813 1/1 309 375 .. 1 87 [] 58.0 2.2e-16
CP000941_1018 1/1 120 187 .. 1 87 [] 53.6 4e-15
CP000941_0256 1/1 242 307 .. 1 87 [] 40.3 2.3e-11
CP000941_0260 1/1 179 244 .. 1 87 [] 39.2 4.8e-11

Alignments of top-scoring domains:
CP000941_0416: domain 1 of 1, from 189 to 254: score 96.4, E = 2.9e-27
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks+flan+sHE+RTPL++++g++e+L + t l++eq
CP000941_0 189 AKSRFLANMSHEFRTPLNGLSGMTEVLAT---------TRLDAEQ-- 224

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re l+ i+ ++++ l+Li+++Ld+srieag
CP000941_0 225 ----------RECLKAIQASVHSVLSLIEEVLDISRIEAG 254

CP000941_0632: domain 1 of 1, from 782 to 847: score 78.7, E = 3.1e-22
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak++fla+l HE RTP+t+++g++elLle t+l+ q
CP000941_0 782 AKTQFLATLGHEVRTPMTGVLGMSELLLE---------TPLDTRQ-- 817

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ y +i+ +++llrL+nd Ldl++ieag
CP000941_0 818 ----------HGYATSIQAVGKHLLRLVNDALDLAKIEAG 847

CP000941_1911: domain 1 of 1, from 236 to 302: score 74.4, E = 5e-21
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +ef a++sHELRTPL++Irg++elLl+ +e++++
CP000941_1 236 RDREFNADVSHELRTPLAVIRGATELLLT--------KPEMDPKI-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +++i+r+ +++++Li lL lsr e g
CP000941_1 273 ----------QQRIRRIQRAEQQCSDLIGALLLLSRNERG 302

CP000941_1921: domain 1 of 1, from 314 to 380: score 68.3, E = 2.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++f a+l+HE+R+PL+aI+ +++lL+e +++l+ +
CP000941_1 314 ALGRFSASLAHEIRNPLAAIKHASQLLEE--------SSNLDKGD-- 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l +il++ +r + +++ +L l+r e
CP000941_1 351 ----------QRLLGIILKQCQRTNGIVESVLGLARRERA 380

CP000941_1813: domain 1 of 1, from 309 to 375: score 58.0, E = 2.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efl++lsHELRTPLt+I+g +elLl + + + + +
CP000941_1 309 LKDEFLSTLSHELRTPLTTILGWSELLLQRIE------EQHPCYKG- 348

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i ++a+ rLi+d+Ldls + g
CP000941_1 349 -------------LSVIASSAKVQKRLISDMLDLSSMLLG 375

CP000941_1018: domain 1 of 1, from 120 to 187: score 53.6, E = 4e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+s + +l+HELR+PL++++g+a+lL +++ +++ e+
CP000941_1 120 ALSAAFKGLAHELRNPLSGLKGAAQLLARRV-------KHRDQEE-- 157

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++e i e+erl+ L+++lL + ++
CP000941_1 158 ----------CDLVELIGAEIERLNTLLERLLFSAPARPH 187

CP000941_0256: domain 1 of 1, from 242 to 307: score 40.3, E = 2.3e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ f+ ++H++RTPL+a+r+ a+l+le e ++ q+
CP000941_0 242 TLRAFMGEAAHQMRTPLAALRAQAQLALE----------EGDAFQL- 277

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l i+r a +++rL+n+lL + + +
CP000941_0 278 ----------RCSLTAIERNASHMSRLLNQLLSDASAIHR 307

CP000941_0260: domain 1 of 1, from 179 to 244: score 39.2, E = 4.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k++f+a++ H+L +PL+a r+++ +L++ + + +
CP000941_0 179 YKTRFIASAVHDLLQPLNAARMFVAMLRK---------QLHDTDA-- 214

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+ ++ +++++ lLd+sr+e+g
CP000941_0 215 ----------LRIANNIDGALIAEDAILSSLLDISRLESG 244


Histogram of all scores:
score obs exp (one = represents 7 sequences)
----- --- ---
-15 3 0|=
-14 18 0|===
-13 47 1|*======
-12 136 48|======*=============
-11 224 249|================================ *
-10 332 462|================================================ *
-9 375 477|====================================================== *
-8 317 357|============================================== *
-7 250 225|================================*===
-6 176 129|==================*=======
-5 91 71|==========*==
-4 51 38|=====*==
-3 37 20|==*===
-2 15 10|=*=
-1 10 5|*=
0 7 2|*
1 4 1|*
> 2 11 -|==


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 275.7000
P(chi-square) = 0

Total sequences searched: 2104

Whole sequence top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 21K

Domain top hits:
tophits_s report:
Total hits: 8
Satisfying E cutoff: 8
Total memory: 24K


Acknowledgements:

This research is funded by:

Developed by: