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Firmicutes Fusobacteria Gammaproteobacteria
Other Bacteria Planctomycetes Spirochaetes
Thermotogae
Classification of phyla is from NCBI page
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132 projects found  

3 accessions found for Methylobacterium sp. 4-46  

Data for CP000943  

Available Atlases
Other Plots
hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_3.hmm [HisKA_3]
Sequence database: CP000943.Gprot.fsa
per-sequence score cutoff: >= 30.1 [TC1]
per-domain score cutoff: >= 30.1 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
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Query HMM: HisKA_3
Accession: PF07730.2
Description: Histidine kinase
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000943_5417 CDS_6272908-6275010 53.2 3.5e-15 1
CP000943_6437 CDS_7458046-7459476 39.9 3e-11 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000943_5417 1/1 484 553 .. 1 70 [] 53.2 3.5e-15
CP000943_6437 1/1 263 334 .. 1 70 [] 39.9 3e-11

Alignments of top-scoring domains:
CP000943_5417: domain 1 of 1, from 484 to 553: score 53.2, E = 3.5e-15
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe..eareald
E +RIARELHD vgQ+ ++++l+l +++ ll ++ p +++ar++++
CP000943_5 484 EQRRIARELHDQVGQTVTGLSLGLKGLEDLL--ARGPSppRARDQVR 528

eirelarealaevRrllgdLRpaal<-*
+++la e +++ r+++dLRp+al
CP000943_5 529 WLQGLAGEIGRDIHRTASDLRPSAL 553

CP000943_6437: domain 1 of 1, from 263 to 334: score 39.9, E = 3e-11
*->ERaRIARELHDsvgQsLsaiklqlelarrlldsdkdpe....earea
ER+R A ELHD+ g L+a+ + ++r++ ++ +e+ +++++++
CP000943_6 263 ERRRTALELHDEFGPCLFALEANSASIARIA--ATLDEpargRLQQR 307

ldeirelarealaevRrllgdLRpaal<-*
d i++++++ + R+ll++LRpa+l
CP000943_6 308 TDDIAGIVKRVQVINRALLSRLRPAGL 334


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-14 10 0|=
-13 56 0|====
-12 108 73|====*==
-11 207 605|============= *
-10 560 1405|================================= *
-9 968 1596|========================================================= *
-8 896 1230|===================================================== *
-7 911 773|=============================================*========
-6 788 437|=========================*=====================
-5 806 234|=============*==================================
-4 444 122|=======*===================
-3 292 63|===*==============
-2 213 32|=*===========
-1 123 16|*=======
0 87 8|*=====
1 54 4|*===
2 35 2|*==
3 13 1|*
4 13 0|=
5 2 0|=
6 8 0|=
7 6 0|=
8 2 0|=
9 2 0|=
10 0 0|
11 0 0|
> 12 5 -|=


% Statistical details of theoretical EVD fit:
mu = -8.7900
lambda = 0.6787
chi-sq statistic = 6945.2520
P(chi-square) = 0

Total sequences searched: 6609

Whole sequence top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 20K

Domain top hits:
tophits_s report:
Total hits: 2
Satisfying E cutoff: 2
Total memory: 21K


Acknowledgements:

This research is funded by:

Developed by: