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Classification of phyla is from NCBI page
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264 projects found  

1 accessions found for Pseudomonas putida W619  

Data for CP000949  

Available Atlases
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hmmsearch - search a sequence database with a profile HMM
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file: /home/projects/MicrobialGenomicsGroup/Packages/hmmdata-1.0.0.package/Resources/noarch/TCS/HisKA_1.hmm [HisKA]
Sequence database: CP000949.Gprot.fsa
per-sequence score cutoff: >= 26.8 [TC1]
per-domain score cutoff: >= 26.8 [TC2]
per-sequence Eval cutoff: [none]
per-domain Eval cutoff: [none]
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query HMM: HisKA
Accession: PF00512.12
Description: His Kinase A (phosphoacceptor) domain
[HMM has been calibrated; E-values are empirical estimates]

Scores for complete sequences (score includes all domains):
Sequence Description Score E-value N
-------- ----------- ----- ------- ---
CP000949_1211 CDS_1344206-1341447 102.5 1.4e-28 1
CP000949_3473 CDS_3854517-3856448 92.5 9.1e-26 1
CP000949_4588 CDS_5098425-5101196 90.7 3e-25 1
CP000949_1483 CDS_1624325-1621968 88.4 1.3e-24 1
CP000949_0153 CDS_160705-159398 83.9 2.6e-23 1
CP000949_2100 CDS_2337457-2340924 83.5 3.3e-23 1
CP000949_1618 CDS_1800539-1796934 74.1 1.5e-20 1
CP000949_2768 CDS_3073855-3077130 72.0 5.7e-20 1
CP000949_3460 CDS_3840939-3838285 71.5 8.1e-20 1
CP000949_1673 CDS_1864113-1862776 70.8 1.3e-19 1
CP000949_0638 CDS_694950-696941 70.4 1.7e-19 1
CP000949_5066 CDS_5652632-5654410 69.6 2.8e-19 1
CP000949_4366 CDS_4848423-4849835 67.2 1.3e-18 1
CP000949_4840 CDS_5380734-5379301 67.2 1.4e-18 1
CP000949_5147 CDS_5737062-5735656 64.0 1.1e-17 1
CP000949_1060 CDS_1166761-1168140 63.3 1.8e-17 1
CP000949_0018 CDS_20058-21464 63.1 2e-17 1
CP000949_1193 CDS_1326617-1328224 62.0 4e-17 1
CP000949_1249 CDS_1383087-1379611 61.2 6.6e-17 1
CP000949_0416 CDS_451072-449987 60.0 1.5e-16 1
CP000949_3287 CDS_3648707-3647343 60.0 1.5e-16 2
CP000949_1169 CDS_1291558-1290341 59.6 1.9e-16 1
CP000949_3673 CDS_4112720-4111503 59.6 1.9e-16 1
CP000949_0969 CDS_1067675-1068985 59.3 2.4e-16 1
CP000949_3004 CDS_3360663-3359299 58.7 3.4e-16 2
CP000949_0047 CDS_50256-51674 58.4 4.2e-16 1
CP000949_3770 CDS_4218139-4219479 57.0 1.1e-15 1
CP000949_2246 CDS_2507873-2505675 51.5 3.7e-14 1
CP000949_2103 CDS_2342308-2343534 50.8 6.1e-14 1
CP000949_3526 CDS_3941533-3940211 49.3 1.6e-13 1
CP000949_1213 CDS_1345121-1346512 47.6 4.7e-13 1
CP000949_1792 CDS_1997492-1995105 45.4 2e-12 1
CP000949_2775 CDS_3085137-3083641 44.3 4.3e-12 1
CP000949_0583 CDS_641820-640474 43.9 5.4e-12 1
CP000949_0737 CDS_819055-816080 43.0 9.5e-12 1
CP000949_4916 CDS_5465447-5467261 41.1 3.4e-11 1
CP000949_2437 CDS_2712491-2714464 40.9 3.9e-11 1
CP000949_2245 CDS_2503503-2505668 40.6 4.8e-11 1
CP000949_4935 CDS_5484073-5482760 40.0 7e-11 1
CP000949_2566 CDS_2862407-2864476 39.3 1.1e-10 1
CP000949_3188 CDS_3541662-3540502 39.0 1.3e-10 1
CP000949_2776 CDS_3086881-3085421 38.8 1.5e-10 2
CP000949_0956 CDS_1056119-1054089 37.3 3.9e-10 1
CP000949_1794 CDS_2000254-1997984 37.0 4.8e-10 1
CP000949_2438 CDS_2716149-2714470 34.9 1.9e-09 1
CP000949_1095 CDS_1213372-1211468 33.6 4.4e-09 1
CP000949_0838 CDS_931937-929292 33.1 6.3e-09 1
CP000949_4185 CDS_4645872-4644418 32.7 8.2e-09 1
CP000949_2310 CDS_2592491-2593906 31.2 2.1e-08 1
CP000949_1198 CDS_1331344-1332690 30.9 2.7e-08 1
CP000949_1042 CDS_1148559-1146802 30.6 3.1e-08 1
CP000949_2921 CDS_3254221-3252923 29.9 5.1e-08 1
CP000949_4265 CDS_4729538-4728282 27.1 3.1e-07 1
CP000949_1936 CDS_2170952-2168877 27.0 3.2e-07 1

Parsed for domains:
Sequence Domain seq-f seq-t hmm-f hmm-t score E-value
-------- ------- ----- ----- ----- ----- ----- -------
CP000949_1211 1/1 285 350 .. 1 87 [] 102.5 1.4e-28
CP000949_3473 1/1 264 329 .. 1 87 [] 92.5 9.1e-26
CP000949_4588 1/1 397 462 .. 1 87 [] 90.7 3e-25
CP000949_1483 1/1 305 370 .. 1 87 [] 88.4 1.3e-24
CP000949_0153 1/1 205 272 .. 1 87 [] 83.9 2.6e-23
CP000949_2100 1/1 486 554 .. 1 87 [] 83.5 3.3e-23
CP000949_1618 1/1 710 776 .. 1 87 [] 74.1 1.5e-20
CP000949_2768 1/1 599 665 .. 1 87 [] 72.0 5.7e-20
CP000949_3460 1/1 651 719 .. 1 87 [] 71.5 8.1e-20
CP000949_1673 1/1 227 293 .. 1 87 [] 70.8 1.3e-19
CP000949_0638 1/1 418 483 .. 1 87 [] 70.4 1.7e-19
CP000949_5066 1/1 372 440 .. 1 87 [] 69.6 2.8e-19
CP000949_4366 1/1 241 307 .. 1 87 [] 67.2 1.3e-18
CP000949_4840 1/1 255 320 .. 1 87 [] 67.2 1.4e-18
CP000949_5147 1/1 238 304 .. 1 87 [] 64.0 1.1e-17
CP000949_1060 1/1 244 309 .. 1 87 [] 63.3 1.8e-17
CP000949_0018 1/1 238 304 .. 1 87 [] 63.1 2e-17
CP000949_1193 1/1 308 373 .. 1 87 [] 62.0 4e-17
CP000949_1249 1/1 796 863 .. 1 87 [] 61.2 6.6e-17
CP000949_0416 1/1 132 197 .. 1 87 [] 60.0 1.5e-16
CP000949_3287 2/2 237 302 .. 1 87 [] 59.7 1.9e-16
CP000949_1169 1/1 173 238 .. 1 87 [] 59.6 1.9e-16
CP000949_3673 1/1 184 252 .. 1 87 [] 59.6 1.9e-16
CP000949_0969 1/1 211 277 .. 1 87 [] 59.3 2.4e-16
CP000949_0047 1/1 241 307 .. 1 87 [] 58.4 4.2e-16
CP000949_3004 2/2 237 302 .. 1 87 [] 58.4 4.2e-16
CP000949_3770 1/1 228 292 .. 1 87 [] 57.0 1.1e-15
CP000949_2246 1/1 366 432 .. 1 87 [] 51.5 3.7e-14
CP000949_2103 1/1 168 241 .. 1 87 [] 50.8 6.1e-14
CP000949_3526 1/1 224 288 .. 1 87 [] 49.3 1.6e-13
CP000949_1213 1/1 233 292 .. 1 87 [] 47.6 4.7e-13
CP000949_1792 1/1 427 495 .. 1 87 [] 45.4 2e-12
CP000949_2775 1/1 273 337 .. 1 87 [] 44.3 4.3e-12
CP000949_0583 1/1 232 291 .. 1 87 [] 43.9 5.4e-12
CP000949_0737 1/1 756 822 .. 1 87 [] 43.0 9.5e-12
CP000949_4916 1/1 370 438 .. 1 87 [] 41.1 3.4e-11
CP000949_2437 1/1 287 355 .. 1 87 [] 40.9 3.9e-11
CP000949_2245 1/1 359 424 .. 1 87 [] 40.6 4.8e-11
CP000949_4935 1/1 221 280 .. 1 87 [] 40.0 7e-11
CP000949_2566 1/1 316 384 .. 1 87 [] 39.3 1.1e-10
CP000949_3188 1/1 153 218 .. 1 87 [] 39.0 1.3e-10
CP000949_2776 2/2 272 336 .. 1 87 [] 37.4 3.7e-10
CP000949_0956 1/1 412 502 .. 1 87 [] 37.3 3.9e-10
CP000949_1794 1/1 532 600 .. 1 87 [] 37.0 4.8e-10
CP000949_2438 1/1 192 260 .. 1 87 [] 34.9 1.9e-09
CP000949_1095 1/1 408 476 .. 1 87 [] 33.6 4.4e-09
CP000949_0838 1/1 656 726 .. 1 87 [] 33.1 6.3e-09
CP000949_4185 1/1 282 325 .. 1 65 [. 32.7 8.2e-09
CP000949_2310 1/1 247 315 .. 1 87 [] 31.2 2.1e-08
CP000949_1198 1/1 238 300 .. 1 87 [] 30.9 2.7e-08
CP000949_1042 1/1 362 430 .. 1 87 [] 30.6 3.1e-08
CP000949_2921 1/1 212 276 .. 1 87 [] 29.9 5.1e-08
CP000949_4265 1/1 203 268 .. 1 87 [] 27.1 3.1e-07
CP000949_1936 1/1 315 383 .. 1 87 [] 27.0 3.2e-07

Alignments of top-scoring domains:
CP000949_1211: domain 1 of 1, from 285 to 350: score 102.5, E = 1.4e-28
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHE+RTPL++I+g+++lL++ +el++ q
CP000949_1 285 IKSEFLANMSHEIRTPLNGILGFTHLLQK---------SELTPRQ-- 320

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+yl+ti+++a+ ll +in++Ld+s+ieag
CP000949_1 321 ----------LDYLSTIEKSADNLLGIINEILDFSKIEAG 350

CP000949_3473: domain 1 of 1, from 264 to 329: score 92.5, E = 9.1e-26
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aksefla++sHELRTP+++++g+++lL++ t l++eq
CP000949_3 264 AKSEFLAMMSHELRTPMNGVLGMLQLLET---------TQLTSEQ-- 299

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ey+ ++ +++ +ll+ ind+Ld+srie
CP000949_3 300 ----------AEYTAVASESTGHLLKVINDILDFSRIERT 329

CP000949_4588: domain 1 of 1, from 397 to 462: score 90.7, E = 3e-25
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ak efla +sHE+RTP+++++g++elLl t+ls +q
CP000949_4 397 AKAEFLAKISHEIRTPMNGVLGMTELLLG---------TPLSVKQ-- 432

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y++ti+++++ ll Lin++Ld+s++e+
CP000949_4 433 ----------RDYVQTIHSAGNELLTLINEILDISKLESR 462

CP000949_1483: domain 1 of 1, from 305 to 370: score 88.4, E = 1.3e-24
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+ flan+sHE+RTPL++++g++ l+l+ ++l +eq
CP000949_1 305 ARAAFLANMSHEIRTPLNGMLGMIALALD---------SPLESEQ-- 340

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l++++++++ l +L+nd+Ldls+ +ag
CP000949_1 341 ----------RQQLSIAHDSGKVLVELLNDILDLSKFDAG 370

CP000949_0153: domain 1 of 1, from 205 to 272: score 83.9, E = 2.6e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+an+sHELRTPLt+I gy+e+Ll+++ ++ ++
CP000949_0 205 MRKDFVANVSHELRTPLTVIAGYLETLLDNV-------EDVNPRW-- 242

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+ + +++ r++ L+ndlL l+++ea
CP000949_0 243 ----------NRALQQMSQQGSRMQTLLNDLLLLAKLEAT 272

CP000949_2100: domain 1 of 1, from 486 to 554: score 83.5, E = 3.3e-23
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
kseflan+sHELRTPL++ + +a+lL e+++ ++ls+eq
CP000949_2 486 YKSEFLANMSHELRTPLNSSLILAKLLAENGE------GNLSAEQ-- 524

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ e+i+++++ ll+Lind+Ld+++ eag
CP000949_2 525 ----------VKFAESIYSAGNDLLNLINDILDIAKVEAG 554

CP000949_1618: domain 1 of 1, from 710 to 776: score 74.1, E = 1.5e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
aks fla++sHE+RTP++a++g++el+ + +++++ +
CP000949_1 710 AKSTFLATISHEIRTPMNAVIGMLELAVK--------RAHQGQID-- 746

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r le+++++a+ ll Li d+Ld+ rie+g
CP000949_1 747 ----------RTSLEVAHHSAKDLLGLIGDILDIVRIESG 776

CP000949_2768: domain 1 of 1, from 599 to 665: score 72.0, E = 5.7e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
ks fla++sHE+RTP++a++g++el+le++ + ++
CP000949_2 599 TKSTFLATMSHEIRTPMNAVIGLLELALEDS-------RKGRCDT-- 636

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++l+t++++a ll Li d+Ld+srie+g
CP000949_2 637 -----------QALQTAHDSAVDLLGLIGDILDISRIESG 665

CP000949_3460: domain 1 of 1, from 651 to 719: score 71.5, E = 8.1e-20
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+s +la++sH+LRTPLta+rg ++ Ll+ + ++ + e+r
CP000949_3 651 LRSALLASVSHDLRTPLTAMRGSIDSLLALG-------EAIPTEDR- 689

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re+le ++eaerl+r i++lLd++r+++g
CP000949_3 690 ----------RELLEGTRNEAERLDRYIQNLLDMTRLGHG 719

CP000949_1673: domain 1 of 1, from 227 to 293: score 70.8, E = 1.3e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTPL+ +++++++ l+ ++s e+
CP000949_1 227 RLSAFSADIAHELRTPLSNLLTHTQVTLT---------RPRSLEE-- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre+l+ l+e++ + ++ind+L l+++++g
CP000949_1 263 ---------YREALHGNLEELQWMAQMINDMLFLAKADHG 293

CP000949_0638: domain 1 of 1, from 418 to 483: score 70.4, E = 1.7e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
k+efla++ HELRTP+++++g +el+ + +ls+e
CP000949_0 418 LKDEFLATITHELRTPMNGVIGSLELMHT---------LPLSAEM-- 453

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++y +t+ +a+ + ++++d+L+l+ ++ag
CP000949_0 454 ----------AQYHRTAVGSAQNMMDMVDDILTLTELQAG 483

CP000949_5066: domain 1 of 1, from 372 to 440: score 69.6, E = 2.8e-19
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+sef+ +sHELRTP+t++ ++ lL+e++ + +++ r
CP000949_5 372 VRSEFVLRASHELRTPVTGMHMAFGLLRERV--------KFPPQARE 410

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++leti +e +rl +LindlL +sr ++g
CP000949_5 411 ----------NDLLETIGEEMQRLTQLINDLLNFSRYQSG 440

CP000949_4366: domain 1 of 1, from 241 to 307: score 67.2, E = 1.3e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f a+++HELR PLt ++g ++++l+ +s+e+
CP000949_4 241 QLEAFNADVAHELRSPLTNLIGQTQVALT---------RGRSAEH-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y e l++ l+e+erl+++ind+L l+ +++g
CP000949_4 277 ---------YFEVLQSNLEELERLRSIINDMLFLASADQG 307

CP000949_4840: domain 1 of 1, from 255 to 320: score 67.2, E = 1.4e-18
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + +l HEL+ PL+aIrg++elL+ ++++eqr
CP000949_4 255 YVERYVHTLTHELKSPLAAIRGASELLQG----------DMPAEQR- 290

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ i+re+erl+++i++lL l+r e+
CP000949_4 291 ----------ARFAGNIERESERLQQMIERLLNLARVEQM 320

CP000949_5147: domain 1 of 1, from 238 to 304: score 64.0, E = 1.1e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTP++ +++++e+ l+ +++ +
CP000949_5 238 RLSNFSADIAHELRTPVSNLLTHTEVVLT---------KKRDLDA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e l + l++++r++r+i+d+L l+++++g
CP000949_5 274 ---------YEENLYSNLEDLKRMSRMIDDMLFLAKADNG 304

CP000949_1060: domain 1 of 1, from 244 to 309: score 63.3, E = 1.8e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ +f+a ++HELRTPL+a+++ +el l+ + +e+
CP000949_1 244 RQAQFIAEAAHELRTPLAALKARVELGLR----------SKQPEE-- 278

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ le++ + ++rl +L n+lL l+r e+g
CP000949_1 279 ---------WHQTLESAAQGTDRLTHLANQLLSLARVENG 309

CP000949_0018: domain 1 of 1, from 238 to 304: score 63.1, E = 2e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s f a+++HELRTP++ +++++e+ l+ +++ +
CP000949_0 238 RLSNFSADIAHELRTPVSNLLTHTEVVLT---------KKRDLDA-- 273

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y++ l + l++++r++r+i+d+L l+++++g
CP000949_0 274 ---------YEDNLYSNLEDLKRMSRMIDDMLFLAKADNG 304

CP000949_1193: domain 1 of 1, from 308 to 373: score 62.0, E = 4e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+++++sHELRTP++ +r+ +e+++ + +e+ r
CP000949_1 308 MQRELVRAVSHELRTPVARLRFGLEMIES----------APNEQAR- 343

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ l ++ +++ l++L++++L+++r+e+g
CP000949_1 344 ----------AKHLAGMDGDIQDLDKLVDEMLTYARLEQG 373

CP000949_1249: domain 1 of 1, from 796 to 863: score 61.2, E = 6.6e-17
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+k++fla++sH+L +PL+a r+++ +L ++ + +++e
CP000949_1 796 SKTRFLAAVSHDLMQPLNAARLFSAALSQQA-------EGMNDEA-- 833

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++++ +++++++ ++Li+dlLd+sr+e+g
CP000949_1 834 ----------QQLVQHMDSSLRSAEELISDLLDISRLENG 863

CP000949_0416: domain 1 of 1, from 132 to 197: score 60.0, E = 1.5e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++l+HE+++PL +Irg+a+lL + el e+ +
CP000949_0 132 TTKMLVRGLAHEIKNPLGGIRGAAQLLAR----------ELLEDGL- 167

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+y+++i++ea+rl++L++++L ++ +
CP000949_0 168 ----------RDYTNVIIEEADRLRNLVDRMLGSNKLPSL 197

CP000949_3287: domain 2 of 2, from 237 to 302: score 59.7, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HE+RTPL+++r++a+ +le + ++e
CP000949_3 237 REHRFIADAAHEMRTPLAVLRLHAQNALE---------AGNDAER-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l + ++rl r +n+lL+l+r e
CP000949_3 273 ----------QKALGFLMGGVDRLTRVVNQLLTLARVEPR 302

CP000949_1169: domain 1 of 1, from 173 to 238: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++f+a l H+LR+PL aI + aelL l+++++
CP000949_1 173 VREQFIAVLGHDLRNPLFAITAGAELLTQ----------RLDDDKN- 208

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r + + i+ +++r ++L++d+Ld++r + g
CP000949_1 209 ----------RAIARHIHTCGQRASQLVRDVLDFARGRLG 238

CP000949_3673: domain 1 of 1, from 184 to 252: score 59.6, E = 1.9e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++++a+l+H++RTPL+a ++ya+ L e + el +e+r
CP000949_3 184 SLGRMVASLAHQIRTPLSAAMLYASHLAE-------DERELAPETR- 222

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++ ++++ ++ l+++++d+L ++r e +
CP000949_3 223 ----------RRFAGSLKERLHELEHQVRDMLVFARGELP 252

CP000949_0969: domain 1 of 1, from 211 to 277: score 59.3, E = 2.4e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + f++++sHELRTPL ++ + +elL e+ + l++
CP000949_0 211 RERLFTSDVSHELRTPLMVLATSCELLIEN--------PSLDSRS-- 247

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +e+i r++e +++L+ +L l+r++
CP000949_0 248 ----------RSQVERIARATEEMRELVKTFLMLARAQRD 277

CP000949_0047: domain 1 of 1, from 241 to 307: score 58.4, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s+f +l+HELR PL+ ++g a+++l+ e+s +
CP000949_0 241 QLSQFSDDLAHELRAPLSNLMGKAQVALT---------RERSLSE-- 276

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
yre le+ +e++r++r+++d+L l++ ++
CP000949_0 277 ---------YREVLESCTEELDRMSRMVSDMLFLAQVSHP 307

CP000949_3004: domain 2 of 2, from 237 to 302: score 58.4, E = 4.2e-16
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ +f+a+++HE+RTPL+ +r++a+ +++ + ++e
CP000949_3 237 REHRFIADAAHEMRTPLAILRLHAQNAQA---------ASTDAER-- 272

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++l ++ ++rl r +n+lL+l+r e
CP000949_3 273 ----------QKALGFLIGGVDRLTRVVNQLLTLARVEPR 302

CP000949_3770: domain 1 of 1, from 228 to 292: score 57.0, E = 1.1e-15
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l+++sHELR PL+ +r ++ l+++ + +eqr
CP000949_3 228 SQRQLLRDVSHELRSPLARLRIALALAER-----------AEAEQR- 262

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ + ++ re +rl++Li+++L+l+r +a+
CP000949_3 263 ----------QALWPRLTRECDRLEDLISEILTLARVDAE 292

CP000949_2246: domain 1 of 1, from 366 to 432: score 51.5, E = 3.7e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt Ir ++ L++ ++l + r
CP000949_2 366 AIGQLTGGVAHDFNNLLTIIRSSLHFLQR---------PNLEDSRR- 402

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl+ti + ++r +L +lL ++r +a
CP000949_2 403 ----------ERYLKTITDTVDRGAKLTGQLLAFARRQAL 432

CP000949_2103: domain 1 of 1, from 168 to 241: score 50.8, E = 6.1e-14
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++++f++ ++HE RTPL+++++ ++l ++ l + ++ ++ s++++
CP000949_2 168 MRDDFMSIVAHEVRTPLNGLILETQLRKMHLAR--GSLEAFSADKL- 211

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ ++e+ +r++++l rLi+d+Ld sri++g
CP000949_2 212 ----------QAMVERDERQINSLIRLIEDMLDVSRIRTG 241

CP000949_3526: domain 1 of 1, from 224 to 288: score 49.3, E = 1.6e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++HELR PLtaI+++++++++ + ++
CP000949_3 224 RERRLTDDAAHELRSPLTAIKTHLQVARM----------TDGAVR-- 258

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le +++ ++r+ r +++lL l+r e
CP000949_3 259 ----------EQALEHAEQGTDRMHRTLEQLLLLARVEGS 288

CP000949_1213: domain 1 of 1, from 233 to 292: score 47.6, E = 4.7e-13
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++++l++lsHE+RTPL+ +r +++ +
CP000949_1 233 MQQQLLRDLSHEMRTPLSRLRVACDGETD------------------ 261

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++ e++ re++ +++L++d L+l++ +a+
CP000949_1 262 ---------LQRLRERLGREVDCMQQLVEDTLQLAWQDAE 292

CP000949_1792: domain 1 of 1, from 427 to 495: score 45.4, E = 2e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++a+++H++++ Lt+I++ ++ L+++l ++ + e++
CP000949_1 427 AVGQLTAGVAHDFNNLLTVILTGSSFLERDL-------DKGDLEKA- 465

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l i++++er +L ++lL +sr +
CP000949_1 466 ----------RKRLTHIREAGERGAKLTSQLLAFSRRQRL 495

CP000949_2775: domain 1 of 1, from 273 to 337: score 44.3, E = 4.3e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e+ ++++H LR+PL+ Ir ael++e ++++
CP000949_2 273 ALGEMSSAVAHSLRNPLANIRSSAELAQE----------IANPQA-- 307

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + i+++++r++r +++lL r +
CP000949_2 308 ----------QQNIVDIISQVDRMSRWVRELLVSLRPTSD 337

CP000949_0583: domain 1 of 1, from 232 to 291: score 43.9, E = 5.4e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +l++lsHELRTPL+ +r + + +l++ q+
CP000949_0 232 QQRLLLRTLSHELRTPLARLRIAHDS-------------DLPPAQL- 264

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ +e++ +++L++d Ldl++++++
CP000949_0 265 -------------RARLGHEVDDMQKLLEDTLDLAWMDTE 291

CP000949_0737: domain 1 of 1, from 756 to 822: score 43.0, E = 9.5e-12
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++a+++HE+ +P+t+I +a+ L+e + e + e +
CP000949_0 756 SIGRLAAGVAHEIGNPITGIACLAQNLRE--------EREGDGEII- 793

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
e+ + il++++r +r+++ l+ ++ ++
CP000949_0 794 -----------ELSSQILEQTKRVSRIVQSLMSFAHAGGS 822

CP000949_4916: domain 1 of 1, from 370 to 438: score 41.1, E = 3.4e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++ + a++sHEL++PL+aIr yae ++ ld + ++e+
CP000949_4 370 VLGTMSASISHELNQPLAAIRSYAENAEILLD------HQRTEDA-- 408

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r l+ i + + r+ ++i l+ ++r +
CP000949_4 409 ----------RGNLKLIGELTGRMASIIAHLRAFARRDRH 438

CP000949_2437: domain 1 of 1, from 287 to 355: score 40.9, E = 3.9e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++ + +l+HE+++ L++I g +elL++++ + e +
CP000949_2 287 AVGQVAGGLAHEMNNLLSGIGGSLELLQRRM-------SQGRMELI- 325

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
y+e ++++++r +L +lL +sr +
CP000949_2 326 ----------DSYVEMARDSVQRAMSLTHRLLAFSRHQPL 355

CP000949_2245: domain 1 of 1, from 359 to 424: score 40.6, E = 4.8e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++++ +++H+L++ Lt I++ elL++ ++ se
CP000949_2 359 MIGQLTGGIAHDLNNMLTPIIASFELLRR---------QPHSERA-- 394

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++++ l++aer ++L+ +lL ++r ++
CP000949_2 395 ----------PRLIDGGLQAAERARNLVGRLLSFARRQTL 424

CP000949_4935: domain 1 of 1, from 221 to 280: score 40.0, E = 7e-11
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ +la++sH+LRTPLt +r+ ++lL +
CP000949_4 221 ERELMLAGVSHDLRTPLTRLRLSLSLLNSD----------------- 250

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ + + r++e ++++++++L + r +
CP000949_4 251 ----------NDLSDDMVRDIEDMDAILDQFLAFIRDGRD 280

CP000949_2566: domain 1 of 1, from 316 to 384: score 39.3, E = 1.1e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ L++I g ++l++ +l ++
CP000949_2 316 AVGQLTGGIAHDFNNLLAGITGSLDLIRLRL-------KQGHVADV- 354

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++yl++++ +a+r +L +lL +sr ++
CP000949_2 355 ----------ERYLSVAQGAAQRAASLTHRLLAFSRRQTL 384

CP000949_3188: domain 1 of 1, from 153 to 218: score 39.0, E = 1.3e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a+++++ +l+H++++ Lt I+ a+l+l + ++
CP000949_3 153 ALGQLTGGLAHDFNNLLTIIMSSAKLALS---------SQDPARV-- 188

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+++le i ++++r +L ++lL+++r ++
CP000949_3 189 ----------QRMLEHIVDAGQRGTKLTQQLLTFARHRQM 218

CP000949_2776: domain 2 of 2, from 272 to 336: score 37.4, E = 3.7e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++e ++++H LR+PL++Ir ael++ +e +
CP000949_2 272 ALGEVSSAVAHSLRNPLASIRSSAELAQV-----------YDEGPA- 306

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
++ ++ i+++++r+++ i++lL+ r
CP000949_2 307 ----------QRNINEIISQVDRMSQWIRQLLQSLRPLDD 336

CP000949_0956: domain 1 of 1, from 412 to 502: score 37.3, E = 3.9e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ + ++a+++HE+++PL aI+ +++ ++++l + +++ eq +
CP000949_0 412 SVGGLAAGMAHEINNPLGAILHNVQNIRRRL----SPELPRNQEQ-A 453

peLR..l.......edpeyreyletilreaerllrLindlLdlsrieag<
+eL +l++ ++ e +e+ ++l+ i++++ r +++ +L +sr +
CP000949_0 454 DELGidLpsvnrylESREVPQLLDGIQQAGARAAKIVTHMLSFSRRSNR 502

-*

CP000949_0 - -

CP000949_1794: domain 1 of 1, from 532 to 600: score 37.0, E = 4.8e-10
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++ f ++sH+LR PL I gy+elL e +++ +e
CP000949_1 532 ELEAFSYSVSHDLRAPLRHIAGYTELLGE-------IEGQGLSERG- 570

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r++l+ i+++a+ +L+++lL +s+++
CP000949_1 571 ----------RRFLKHIEEAAQFAGSLVDNLLNFSQMGRS 600

CP000949_2438: domain 1 of 1, from 192 to 260: score 34.9, E = 1.9e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a ++++ +++H++++ Lt+I g el+ ++l s + +
CP000949_2 192 AIGQLAGGVAHDFNNLLTSIGGSFELIDRRL-------KQGSTKGV- 230

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+ +l++ ++++ r rL +lL +s ++
CP000949_2 231 ----------ESLLHRGQEAVSRAARLTHRLLAFSSRQSL 260

CP000949_1095: domain 1 of 1, from 408 to 476: score 33.6, E = 4.4e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++HEL++PL+a+r+++ ++l + +++
CP000949_1 408 AIGQMSTSIAHELNQPLAALRTLSGNTVRFL-------ERGALDTA- 446

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l+t+ + ++r+ r+ l+ ++r +
CP000949_1 447 ----------STNLRTMNELIDRMGRITASLRSFARRGDD 476

CP000949_0838: domain 1 of 1, from 656 to 726: score 33.1, E = 6.3e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++e++ +l HE+++PL+++r+++ l++++ ++ e +
CP000949_0 656 TLGELATGLVHEINQPLNVMRLAIANTLKRVE-----SGVVEVEYL- 696

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
l++i+ ++ r rL++ ++++ r a
CP000949_0 697 ----------TGKLQRIDAQVGRVARLVEHMRTYGRRSAL 726

CP000949_4185: domain 1 of 1, from 282 to 325: score 32.7, E = 8.2e-09
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
++s++++++sH+LRTP+t +r+ +elL++ + + ++
CP000949_4 282 ERSQLFSAISHDLRTPITRLRLRVELLED---------ERMQAKF-- 317

peLRledpeyreyletil<-*
+ l+ ++
CP000949_4 318 ----------SQDLDELE 325

CP000949_2310: domain 1 of 1, from 247 to 315: score 31.2, E = 2.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+ +++HE ++ L+aI ++ae+++++l + +++ ++
CP000949_2 247 MLGELGTSIAHEVNQSLAAIVTNAEAAQRWL-------DRADAHEA- 285

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r ++ ++ + a+r ++ i+++++ +r ++
CP000949_2 286 ----------RVAIGRVASNARRASDVIQRIREHTRKAEP 315

CP000949_1198: domain 1 of 1, from 238 to 300: score 30.9, E = 2.7e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+ ++ l +l+H L+TPL++++g+ e ++ ++ +e
CP000949_1 238 RYRDSLGDLAHSLKTPLAVLQGLGESMQQRV-------SE------- 270

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
re +++++++er++++i+ L+ + ++
CP000949_1 271 ----------REQARVLQSQIERMSQQIDYQLQRASLRKS 300

CP000949_1042: domain 1 of 1, from 362 to 430: score 30.6, E = 3.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a++++ a+++HE+++PLt+ r+ +e+L+ ld + + +e
CP000949_1 362 ALGQMSAAMAHEINQPLTTQRMQLETLRLLLD------HGRYDEA-- 400

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r +le +++ + r+ +L + l +++r
CP000949_1 401 ----------RAALEPLEQMLTRMAALTSHLKTFARNSPV 430

CP000949_2921: domain 1 of 1, from 212 to 276: score 29.9, E = 5.1e-08
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
+++e+l ++sHELRTPLt + + + lL + e ++
CP000949_2 212 QQRELLNAVSHELRTPLTRLDFGLVLLFD----------EVPPTS-- 246

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
r+ l + ++ l++L+ +lL +sr+ +
CP000949_2 247 ----------RKRLLELVGHVRELDELVLELLSYSRLYNA 276

CP000949_4265: domain 1 of 1, from 203 to 268: score 27.1, E = 3.1e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +a+++HEL TPL++++ ++ ++ +++++
CP000949_4 203 AVATQAAGAAHELGTPLATMSVLLNEMRQ---------DHADPLL-- 238

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+e l++++++++ + + +++l + +
CP000949_4 239 ----------QEDLQILQDQVKLCKETLQQLVRAAEANRR 268

CP000949_1936: domain 1 of 1, from 315 to 383: score 27.0, E = 3.2e-07
*->akseflanlsHELRTPLtaIrgyaelLleeldkvlagdtelseeqrl
a +++ +++H++++ L +I+ + elL+ +l +qr
CP000949_1 315 AIGQLSGGIAHDFNNLLGSILNTQELLQLRL-----------QQQRY 350

peLRledpeyreyletilreaerllrLindlLdlsrieag<-*
+eL +++le + a+r ++L+++lL +sr ++
CP000949_1 351 NEL-------EKLLELSNSMAKRASSLVQRLLAFSRQQTL 383


Histogram of all scores:
score obs exp (one = represents 17 sequences)
----- --- ---
-15 1 0|=
-14 13 0|=
-13 45 3|*==
-12 193 118|======*=====
-11 457 614|=========================== *
-10 767 1139|============================================== *
-9 964 1176|========================================================= *
-8 973 881|===================================================*======
-7 637 555|================================*=====
-6 459 319|==================*========
-5 270 175|==========*=====
-4 143 93|=====*===
-3 78 49|==*==
-2 43 25|=*=
-1 30 13|*=
0 17 7|*
1 21 3|*=
2 5 1|*
3 2 1|*
4 2 0|=
5 1 0|=
> 6 61 -|====


% Statistical details of theoretical EVD fit:
mu = -8.9758
lambda = 0.6525
chi-sq statistic = 468.0007
P(chi-square) = 0

Total sequences searched: 5182

Whole sequence top hits:
tophits_s report:
Total hits: 54
Satisfying E cutoff: 54
Total memory: 22K

Domain top hits:
tophits_s report:
Total hits: 54
Satisfying E cutoff: 54
Total memory: 42K


Acknowledgements:

This research is funded by:

Developed by: